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Adding Harmony and multiread #108

Merged
merged 2 commits into from
Nov 13, 2023
Merged

Adding Harmony and multiread #108

merged 2 commits into from
Nov 13, 2023

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euxhenh
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@euxhenh euxhenh commented Nov 13, 2023

  • Adding Harmony for barch normalization
  • Adding functionality to read multiple anndatas and merge
  • Adding option to filter by equality

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codecov bot commented Nov 13, 2023

Codecov Report

Attention: 44 lines in your changes are missing coverage. Please review.

Comparison is base (c3cba08) 83.08% compared to head (fba47e6) 81.84%.

❗ Current head fba47e6 differs from pull request most recent head 215e0c0. Consider uploading reports for the commit 215e0c0 to get more accurate results

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #108      +/-   ##
==========================================
- Coverage   83.08%   81.84%   -1.24%     
==========================================
  Files          31       31              
  Lines        2240     2303      +63     
==========================================
+ Hits         1861     1885      +24     
- Misses        379      418      +39     
Files Coverage Δ
src/grinch/aliases.py 100.00% <100.00%> (ø)
src/grinch/utils/stats.py 76.87% <100.00%> (+0.14%) ⬆️
src/grinch/main.py 57.14% <0.00%> (-1.69%) ⬇️
src/grinch/utils/decorators.py 51.42% <0.00%> (-17.15%) ⬇️
src/grinch/processors/gsea.py 69.19% <0.00%> (-0.59%) ⬇️
src/grinch/normalizers.py 79.50% <77.27%> (-0.50%) ⬇️
src/grinch/cond_filter.py 88.14% <45.45%> (-3.86%) ⬇️
src/grinch/pipeline.py 59.83% <47.05%> (-9.30%) ⬇️

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@euxhenh euxhenh merged commit 2553023 into main Nov 13, 2023
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@euxhenh euxhenh deleted the eh/harmony branch November 13, 2023 21:42
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