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Add nucleotide-count exercise #31

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8 changes: 8 additions & 0 deletions config.json
Original file line number Diff line number Diff line change
Expand Up @@ -100,6 +100,14 @@
"prerequisites": [],
"difficulty": 2
},
{
"slug": "nucleotide-count",
"name": "Nucleotide Count",
"uuid": "6fc1e4ab-157d-4237-b5dd-9686d3b03feb",
"practices": [],
"prerequisites": [],
"difficulty": 3
},
{
"slug": "sum-of-multiples",
"name": "Sum of Multiples",
Expand Down
23 changes: 23 additions & 0 deletions exercises/practice/nucleotide-count/.docs/instructions.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
# Instructions

Each of us inherits from our biological parents a set of chemical instructions known as DNA that influence how our bodies are constructed.
All known life depends on DNA!

> Note: You do not need to understand anything about nucleotides or DNA to complete this exercise.

DNA is a long chain of other chemicals and the most important are the four nucleotides, adenine, cytosine, guanine and thymine.
A single DNA chain can contain billions of these four nucleotides and the order in which they occur is important!
We call the order of these nucleotides in a bit of DNA a "DNA sequence".

We represent a DNA sequence as an ordered collection of these four nucleotides and a common way to do that is with a string of characters such as "ATTACG" for a DNA sequence of 6 nucleotides.
'A' for adenine, 'C' for cytosine, 'G' for guanine, and 'T' for thymine.

Given a string representing a DNA sequence, count how many of each nucleotide is present.
If the string contains characters that aren't A, C, G, or T then it is invalid and you should signal an error.

For example:

```text
"GATTACA" -> 'A': 3, 'C': 1, 'G': 1, 'T': 2
"INVALID" -> error
```
22 changes: 22 additions & 0 deletions exercises/practice/nucleotide-count/.meta/config.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
{
"authors": [
"erikschierboom"
],
"contributors": [
"BNAndras"
],
"files": {
"solution": [
"src/nucleotide-count.art"
],
"test": [
"tests/test-nucleotide-count.art"
],
"example": [
".meta/src/example.art"
]
},
"blurb": "Given a DNA string, compute how many times each nucleotide occurs in the string.",
"source": "The Calculating DNA Nucleotides_problem at Rosalind",
"source_url": "https://rosalind.info/problems/dna/"
}
10 changes: 10 additions & 0 deletions exercises/practice/nucleotide-count/.meta/src/example.art
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
nucleotideCounts: function [strand][
counts: #[A: 0 C: 0 G: 0 T: 0]
loop strand 'nucleotide [
switch not? contains? keys counts to :string nucleotide
-> return null
-> counts\[nucleotide]: inc counts\[nucleotide]
]

counts
]
25 changes: 25 additions & 0 deletions exercises/practice/nucleotide-count/.meta/tests.toml
Original file line number Diff line number Diff line change
@@ -0,0 +1,25 @@
# This is an auto-generated file.
#
# Regenerating this file via `configlet sync` will:
# - Recreate every `description` key/value pair
# - Recreate every `reimplements` key/value pair, where they exist in problem-specifications
# - Remove any `include = true` key/value pair (an omitted `include` key implies inclusion)
# - Preserve any other key/value pair
#
# As user-added comments (using the # character) will be removed when this file
# is regenerated, comments can be added via a `comment` key.

[3e5c30a8-87e2-4845-a815-a49671ade970]
description = "empty strand"

[a0ea42a6-06d9-4ac6-828c-7ccaccf98fec]
description = "can count one nucleotide in single-character input"

[eca0d565-ed8c-43e7-9033-6cefbf5115b5]
description = "strand with repeated nucleotide"

[40a45eac-c83f-4740-901a-20b22d15a39f]
description = "strand with multiple nucleotides"

[b4c47851-ee9e-4b0a-be70-a86e343bd851]
description = "strand with invalid nucleotides"
3 changes: 3 additions & 0 deletions exercises/practice/nucleotide-count/src/nucleotide-count.art
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
nucleotideCounts: function [strand][
panic "Please implement the nucleotideCounts function"
]
3 changes: 3 additions & 0 deletions exercises/practice/nucleotide-count/tester.art
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
import {unitt}!

runTests.failFast findTests "tests"
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
import {unitt}!
import {src/nucleotide-count}!

suite "Nucleotide Count" [
test "an empty strand does not increment the counts" [
result: nucleotideCounts ""
expected: #[A: 0 C: 0 G: 0 T: 0]
assert -> expected = result
]

test.skip "a strand with one nucleotide increments that nucleotide's count" [
result: nucleotideCounts "G"
expected: #[A: 0 C: 0 G: 1 T: 0]
assert -> expected = result
]

test.skip "a strand with a repeated nucleotide increments that nucleotide's count" [
result: nucleotideCounts "GGGGGGG"
expected: #[A: 0 C: 0 G: 7 T: 0]
assert -> expected = result
]

test.skip "a strand with multiple nucleotides increments the respective nucleotide counts" [
result: nucleotideCounts "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC"
expected: #[A: 20 C: 12 G: 17 T: 21]
assert -> expected = result
]

test.skip "a strand with invalid nucleotides returns null instead" [
result: nucleotideCounts "AGXXACT"
assert -> null = result
]
]