fix permutation importance for dataset of len 1 #547
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| testing_minimal: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11' ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Minimal Bofire, Python ${{ matrix.python-version }} | |
| run: pip install "." pytest | |
| - name: Run domain-only test, Python ${{ matrix.python-version }} | |
| run: | | |
| pytest tests/bofire/data_models/test_domain.py \ | |
| tests/bofire/data_models/test_base.py \ | |
| tests/bofire/data_models/test_constraint_fulfillment.py \ | |
| tests/bofire/data_models/test_constraints.py \ | |
| tests/bofire/data_models/test_domain_validators.py \ | |
| tests/bofire/data_models/test_features.py \ | |
| tests/bofire/data_models/test_filters.py \ | |
| tests/bofire/data_models/test_nchoosek_combinatorics.py \ | |
| tests/bofire/data_models/test_numeric.py \ | |
| tests/bofire/data_models/test_unions.py \ | |
| tests/bofire/data_models/test_util.py | |
| testing: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.9', '3.11' ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Dependencies, Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge cyipopt | |
| pip install ".[optimization,tests,cheminfo,xgb]" | |
| - name: Run tests, Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: pytest -ra --cov=bofire --cov-report term-missing tests | |
| - name: Run pip freeze, Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: pip freeze | |
| testing_against_latest_botorch: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: test | |
| python-version: '3.10' | |
| - name: Install Dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge cyipopt | |
| pip install --upgrade git+https://github.com/cornellius-gp/linear_operator.git | |
| pip install --upgrade git+https://github.com/cornellius-gp/gpytorch.git | |
| export ALLOW_LATEST_GPYTORCH_LINOP=true | |
| pip install --upgrade git+https://github.com/pytorch/botorch.git | |
| pip install ".[optimization,tests,cheminfo,xgb]" | |
| - name: Run tests, Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: pytest -ra --cov=bofire --cov-report term-missing tests | |
| - name: Run pip freeze, Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: pip freeze | |
| testing_tutorials: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: test | |
| python-version: '3.10' | |
| - name: Install Dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge cyipopt | |
| pip install ".[optimization,tests,cheminfo,xgb]" | |
| - name: Run notebooks | |
| shell: bash -l {0} | |
| run: python scripts/run_tutorials.py -p "$(pwd)" | |