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new functionality and performance improvements developed under NECCTON #75

Merged
merged 67 commits into from
Jul 3, 2024
Merged

new functionality and performance improvements developed under NECCTON #75

merged 67 commits into from
Jul 3, 2024

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jornbr
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@jornbr jornbr commented Jul 2, 2024

new functionality and performance improvements developed under the NECCTON project

@jornbr
coupling: clean-up and improved error messages
1f63e3a
@jornbr
fabm_particle clean-up
a18bf1b
@jornbr
added fabm_builtin_depth_mapping
c937a94
@jornbr
fixed data type
07623fa
@jornbr
coupling optimizations
b5db3aa
@jornbr
fixed flux units and long_name
cdd4145
@jornbr
added first particle examples
17cdbb3
@jornbr
exclude flux sums from output by default
3819884
@jornbr
added output argument to get_aggregate_variable_access
c713d31
@jornbr
speed up particle-based coupling
2b15a86
@jornbr
support faster link-based coupling
97da44e
@jornbr
use link-based coupling for sums
fb39396
@jornbr
cleaned-up request_coupling
bfd0361
@jornbr
refactored sum
e5efa0c
@jornbr
use link-based coupling for aggregate variable contributions
994361a
@jornbr
replace coupling%set_string by type_particle_model%request_coupling
5822510
@jornbr
clean-up of depth mapping module and example
eb5be3e
@jornbr
depth mapping: added 2d->3d projection and 3d->2d override, improved …
9886798 
…documentation, clean-up
@jornbr
fixed long name of conservation check diagnostics
698b26e
@jornbr
unit notation change
0310b3f
@jornbr
updated depth_integrated_predator example
cbea588
@jornbr
depth mapping clean-up
3cccca3
@jornbr
added coupling logging
363d120
@jornbr
github actions: upgraded to actions/setup-python@v5
7ba17da
@jornbr
postpone transfer of initial values until after calls to before_coupling
8939995
@jornbr
sum: use link-based coupling
16fa0ff
@jornbr
sum: use separate interfaces for name- and link-based components; use…
241e71f 
… link-based coupling for conservation checks
@jornbr
use link-based coupling for duplicates
5748f13
@jornbr
safer log unit check
4e4321c
@jornbr
added first doxygen-based documentation
35a5e40
@jornbr
sum: mark some components as private
8c8c0b2
@jornbr
access_set_source -> access_add_source
08e9bc2
@jornbr
clean up register_model_dependency and add support for model dependen…
fb4649a 
…cy long_name
@jornbr
depth mapping: use register_model_dependency improvements
791c8d0
@jornbr
verify more often whether model%start has been called, if compiled in…
bb0108e 
… debug mode
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
4d0b1bb
@jornbr
make state variable coupling to non-state variables a warning, not an…
aadb4ea 
… error
@jornbr
work around stack overflow (time filters+ifort)
e14eeb2
@jornbr
improved reporting of ignored sources
9086c84
@jornbr
split lines
a37297c
@jornbr
replaced master/slave with variable/target
3805999
@jornbr
depth mapping: more generic long names
4df7032
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
eb3a99c
@jornbr
clean up depth mapping logic
8e88637
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
bfcdd7e
@jornbr
depth mapping: support multiple vertical distributions through type_v…
07ebcdf 
…ertical_distribution_id
@jornbr
depth mapping: made type_vertical_distribution_id public
0300e20
@jornbr
depth mapping: replaced remaining name-based coupling to weights
f1463d2
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
95e93a0
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
403d830
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
1749d0e
@jornbr
support breaking of circular dependency chains by flagging couplings …
47dea10 
…with @old
@jornbr
ensure stale dependencies are correctly loaded and stored
aac97ac
@jornbr
do not preload potentially-stale inputs if calculated by earlier call
1a94798
@jornbr
add stale inputs to the graph before creating tasks/calls
e21aef6
@jornbr
freeze graph as part of job_create_tasks
585d0e2
@jornbr
fabm_job: return call from index find_responsible_task, making output…
55999af 
…_is_produced_before redundant
@jornbr
fabm_job: simplify link_cowritten_outputs
50197e5
@jornbr
Merge branch 'master' of github.com:fabm-model/fabm into neccton
0b962b4
@jornbr jornbr merged commit ffa5b2b into master Jul 3, 2024
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@jornbr