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Update monomer example with newest sing image and DB
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paulasanematsu committed Jun 28, 2023
1 parent e87e731 commit f448c64
Showing 1 changed file with 6 additions and 3 deletions.
9 changes: 6 additions & 3 deletions Applications/AlphaFold/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -50,11 +50,13 @@ You will have to edit in the `run_alphafold.sh` script:
**Note:** AlphaFold screen output goes to the stderr file (`.err`) rather than the
stdout file (`.out`).

### Slurm script
### Monomer batch job

https://github.com/fasrc/User_Codes/blob/d0114e5ba12c2f201a1781a873420e4155572d93/Applications/AlphaFold/run_alphafold.sh#L1-L35
Slurm script

### Fasta file
https://github.com/fasrc/User_Codes/blob/e87e731049e121395be476064058570ed69b9f6c/Applications/AlphaFold/run_alphafold.sh#L1-L59

Fasta file

https://github.com/fasrc/User_Codes/blob/f15ac0ea89488dc841d703fef33fa12a094779f2/Applications/AlphaFold/5ZE6_1.fasta#L1-L2

Expand All @@ -66,6 +68,7 @@ directory where `run_alphafold.sh` is located. Then submit a slurm batch job
with the command:

```bash
# monomer job
sbatch run_alphafold.sh
```

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