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* Add vscode config * Comment out empty tests causing issues running tests in vscode * Add Fishery, update test dependencies, update chart.js * Add factory for building fhir r4 observation object * Fix deprecation warnings in _mixins.scss * Update observation model for better value and reference range parsing * Add observation-bar-chart.component to pull out bar chart logic into reusable component * Use new component in observation resource and report lab component
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,26 @@ | ||
| { | ||
| "version": "0.2.0", | ||
| "configurations": [ | ||
| { | ||
| "name": "Go Tests", | ||
| "type": "go", | ||
| "request": "launch", | ||
| "mode": "test", | ||
| "program": "${workspaceFolder}/backend", | ||
| "args": [ | ||
| "-test.run" | ||
| ] | ||
| }, | ||
| { | ||
| "type": "chrome", | ||
| "request": "attach", | ||
| "name": "Attach Karma Chrome", | ||
| "address": "localhost", | ||
| "port": 9333, | ||
| "pathMapping": { | ||
| "/": "${workspaceRoot}/frontend", | ||
| "/base/": "${workspaceRoot}/frontend" | ||
| } | ||
| } | ||
| ] | ||
| } |
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|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| { | ||
| "karmaTestExplorer.karmaConfFilePath": "frontend/karma.conf.js", | ||
| "karmaTestExplorer.projectWorkspaces": [ | ||
| "frontend" | ||
| ] | ||
| } |
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9 changes: 9 additions & 0 deletions
9
...pp/components/fhir-card/common/observation-bar-chart/observation-bar-chart.component.html
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| @@ -0,0 +1,9 @@ | ||
| <!-- surrounding div needed so chart can resize when window size changes --> | ||
| <div class="observation-bar-chart-container"> | ||
| <canvas baseChart | ||
| [height]="chartHeight" | ||
| [type]="'bar'" | ||
| [datasets]="barChartData" | ||
| [labels]="barChartLabels" | ||
| [options]="barChartOptions"></canvas> | ||
| </div> |
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...components/fhir-card/common/observation-bar-chart/observation-bar-chart.component.spec.ts
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|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| import { ComponentFixture, TestBed } from '@angular/core/testing'; | ||
| import { ObservationBarChartComponent } from './observation-bar-chart.component'; | ||
|
|
||
| describe('ObservationBarChartComponent', () => { | ||
| let component: ObservationBarChartComponent; | ||
| let fixture: ComponentFixture<ObservationBarChartComponent>; | ||
|
|
||
| beforeEach(async () => { | ||
| await TestBed.configureTestingModule({ | ||
| imports: [ ObservationBarChartComponent ] | ||
| }) | ||
| .compileComponents(); | ||
|
|
||
| fixture = TestBed.createComponent(ObservationBarChartComponent); | ||
| component = fixture.componentInstance; | ||
| fixture.detectChanges(); | ||
| }); | ||
|
|
||
| it('should create', () => { | ||
| expect(component).toBeTruthy(); | ||
| }); | ||
| }); |
161 changes: 161 additions & 0 deletions
161
.../app/components/fhir-card/common/observation-bar-chart/observation-bar-chart.component.ts
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|---|---|---|
| @@ -0,0 +1,161 @@ | ||
| import { Component, Input, OnInit } from '@angular/core'; | ||
| import { formatDate } from '@angular/common'; | ||
| import { ObservationModel } from '../../../../../lib/models/resources/observation-model'; | ||
| import { ChartConfiguration } from 'chart.js'; | ||
| import { NgChartsModule } from 'ng2-charts'; | ||
|
|
||
| const defaultChartHeight = 65; | ||
| const defaultChartEntryHeight = 30; | ||
|
|
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| @Component({ | ||
| standalone: true, | ||
| selector: 'observation-bar-chart', | ||
| imports: [ NgChartsModule ], | ||
| templateUrl: './observation-bar-chart.component.html', | ||
| styleUrls: ['./observation-bar-chart.component.scss'] | ||
| }) | ||
| export class ObservationBarChartComponent implements OnInit { | ||
| @Input() observations: [ObservationModel] | ||
|
|
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| chartHeight = defaultChartEntryHeight; | ||
|
|
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| // based on https://stackoverflow.com/questions/38889716/chartjs-2-stacked-bar-with-marker-on-top | ||
| // https://stackoverflow.com/questions/62711919/chart-js-horizontal-lines-per-bar | ||
| barChartData =[ | ||
| { | ||
| label: "Reference", | ||
| data: [], | ||
| dataLabels: [], | ||
| backgroundColor: "rgba(91, 71, 251,0.6)", | ||
| hoverBackgroundColor: "rgba(91, 71, 251,0.2)", | ||
| parsing: { | ||
| xAxisKey: 'range' | ||
| }, | ||
| tooltip: { | ||
| callbacks: { | ||
| label: function(context) { | ||
| return `${context.dataset.label}: ${context.dataset.dataLabels[context.dataIndex]}`; | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| label: "Result", | ||
| data: [], | ||
| // @ts-ignore | ||
| dataLabels: [], | ||
| borderColor: "rgba(0,0,0,1)", | ||
| backgroundColor: "rgba(0,0,0,1)", | ||
| hoverBackgroundColor: "rgba(0,0,0,1)", | ||
| minBarLength: 3, | ||
| barPercentage: 1, | ||
| parsing: { | ||
| xAxisKey: 'value' | ||
| }, | ||
| // @ts-ignore | ||
| tooltip: { | ||
| callbacks: { | ||
| label: function(context) { | ||
| let label = `${context.dataset.label}: ${context.parsed.x}`; | ||
|
|
||
| if (context.dataset.dataLabels[context.dataIndex]) { | ||
| return `${label} ${context.dataset.dataLabels[context.dataIndex]}`; | ||
| } | ||
| return label; | ||
| } | ||
| } | ||
| } | ||
| } | ||
| ] as ChartConfiguration<'bar'>['data']['datasets'] | ||
|
|
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| barChartLabels = [] // ["2020", "2018"] //["1","2","3","4","5","6","7","8"] | ||
|
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| barChartOptions = { | ||
| indexAxis: 'y', | ||
| maintainAspectRatio: false, | ||
| legend:{ | ||
| display: false, | ||
| }, | ||
| autoPadding: true, | ||
| //add padding to fix tooltip cutoff | ||
| layout: { | ||
| padding: { | ||
| left: 0, | ||
| right: 4, | ||
| top: 0, | ||
| bottom: 10 | ||
| } | ||
| }, | ||
| scales: { | ||
| y: { | ||
| stacked: true, | ||
| ticks: { | ||
| beginAtZero: true, | ||
| fontSize: 10, | ||
| min: 0, | ||
| }, | ||
| }, | ||
| x: { | ||
| scaleLabel:{ | ||
| display: false, | ||
| padding: 4, | ||
| }, | ||
| ticks: { | ||
| beginAtZero: true, | ||
| fontSize: 10, | ||
| min: 0, | ||
| }, | ||
| }, | ||
| } | ||
| } as ChartConfiguration<'bar'>['options'] | ||
|
|
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| barChartColors = [ | ||
| { | ||
| backgroundColor: 'white' | ||
| } | ||
| ]; | ||
|
|
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| constructor() { } | ||
|
|
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| ngOnInit(): void { | ||
| if(!this.observations || !this.observations[0]) { | ||
| return; | ||
| } | ||
|
|
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| let currentValues: number[] = [] | ||
| let referenceRanges = [] | ||
|
|
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| for(let observation of this.observations) { | ||
| let refRange = observation.reference_range; | ||
|
|
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| referenceRanges.push([refRange.low || 0, refRange.high || 0]); | ||
| currentValues.push(observation.value_quantity_value); | ||
|
|
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| if (observation.effective_date) { | ||
| this.barChartLabels.push(formatDate(observation.effective_date, "mediumDate", "en-US", undefined)); | ||
| } else { | ||
| this.barChartLabels.push('Unknown date'); | ||
| } | ||
|
|
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| this.barChartData[0]['dataLabels'].push(observation.referenceRangeDisplay()); | ||
| this.barChartData[1]['dataLabels'].push(observation.value_quantity_unit); | ||
| } | ||
|
|
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| let xAxisMax = Math.max(...currentValues) * 1.3; | ||
| this.barChartOptions.scales['x']['max'] = xAxisMax | ||
|
|
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| let updatedRefRanges = referenceRanges.map(range => { | ||
| if (range[0] && !range[1]) { | ||
| return [range[0], xAxisMax] | ||
| } else { | ||
| return [range[0], range[1]] | ||
| } | ||
| }); | ||
|
|
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| // @ts-ignore | ||
| this.barChartData[0].data = updatedRefRanges | ||
| this.barChartData[1].data = currentValues.map(v => [v, v]) | ||
|
|
||
| this.chartHeight = defaultChartHeight + (defaultChartEntryHeight * currentValues.length) | ||
| } | ||
| } |
64 changes: 64 additions & 0 deletions
64
...rc/app/components/fhir-card/common/observation-bar-chart/observation-bar-chart.stories.ts
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|---|---|---|
| @@ -0,0 +1,64 @@ | ||
| import type { Meta, StoryObj } from '@storybook/angular'; | ||
| import { fhirVersions } from "../../../../../lib/models/constants"; | ||
| import { ObservationBarChartComponent } from './observation-bar-chart.component'; | ||
| import { ObservationModel } from 'src/lib/models/resources/observation-model'; | ||
| import { observationR4Factory } from 'src/lib/fixtures/factories/r4/resources/observation-r4-factory'; | ||
|
|
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| // More on how to set up stories at: https://storybook.js.org/docs/angular/writing-stories/introduction | ||
| const meta: Meta<ObservationBarChartComponent> = { | ||
| title: 'Fhir Card/Common/ObservationBarChart', | ||
| component: ObservationBarChartComponent, | ||
| decorators: [ | ||
| ], | ||
| tags: ['autodocs'], | ||
| render: (args: ObservationBarChartComponent) => ({ | ||
| props: { | ||
| backgroundColor: null, | ||
| ...args, | ||
| }, | ||
| }), | ||
| argTypes: { | ||
| observations: { | ||
| control: 'object', | ||
| } | ||
| }, | ||
| }; | ||
|
|
||
| export default meta; | ||
| type Story = StoryObj<ObservationBarChartComponent>; | ||
|
|
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| export const NoRange: Story = { | ||
| args: { | ||
| observations: [new ObservationModel(observationR4Factory.build(), fhirVersions.R4)] | ||
| } | ||
| }; | ||
|
|
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| export const Range: Story = { | ||
| args: { | ||
| observations: [new ObservationModel(observationR4Factory.referenceRange().build(), fhirVersions.R4)] | ||
| } | ||
| }; | ||
|
|
||
| export const RangeOnlyLow: Story = { | ||
| args: { | ||
| observations: [new ObservationModel(observationR4Factory.referenceRangeOnlyLow().build(), fhirVersions.R4)] | ||
| } | ||
| }; | ||
|
|
||
| export const RangeOnlyLowText: Story = { | ||
| args: { | ||
| observations: [new ObservationModel(observationR4Factory.referenceRangeStringOnlyLow().build(), fhirVersions.R4)] | ||
| } | ||
| }; | ||
|
|
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| export const RangeOnlyHigh: Story = { | ||
| args: { | ||
| observations: [new ObservationModel(observationR4Factory.referenceRangeOnlyHigh().build(), fhirVersions.R4)] | ||
| } | ||
| }; | ||
|
|
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| export const RangeOnlyHighText: Story = { | ||
| args: { | ||
| observations: [new ObservationModel(observationR4Factory.referenceRangeStringOnlyHigh().build(), fhirVersions.R4)] | ||
| } | ||
| }; |
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