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general BASH pipe for NGS tech to use on PBS Pro HPC

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
00_Merge		00_Merge
01_MAPPING		01_MAPPING
02a_Peak_Reference_ATAC		02a_Peak_Reference_ATAC
02b_Count_Normalise		02b_Count_Normalise
03_DEG		03_DEG
README.md		README.md

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Basic_NGS_Pipes - CURRENTLY BEING MOVED TO Nextflow

Old set of functions writen in BASH and R

It takes in a Sample_Sheet tab separated with sample description and automatically select the pipeline to process the samples.

Individual piepes are executed using conda anvironment.

== THIS REPO IS DEPRECATED CURRENTLY WORKING TO MOVE ALL FUNCTIONALITY ONTO NEXTFLOW

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general BASH pipe for NGS tech to use on PBS Pro HPC

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