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Add API query files
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jhudsl-robot committed May 2, 2024
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Showing 7 changed files with 21 additions and 21 deletions.
2 changes: 1 addition & 1 deletion resources/youtube_anvil_wdl_data.csv
Original file line number Diff line number Diff line change
@@ -8,7 +8,7 @@ Check out the Getting Started Guide here: https://jhudatascience.org/AnVIL_Book_
AnVIL Help: https://help.anvilproject.org/

You can see the slides for this video here: https://docs.google.com/presentation/d/1Dioe_Qd3hdJ0UAP4LA6gJsm07Lr1wRpax5FLYr6xU3M",AnVIL Project,PL6aYJ_0zJ4uB1dXNWtmisnX51hMSxrE_j,0,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/qtRcFEx31lY/default.jpg,120,90,https://i.ytimg.com/vi/qtRcFEx31lY/mqdefault.jpg,320,180,https://i.ytimg.com/vi/qtRcFEx31lY/hqdefault.jpg,480,360,https://i.ytimg.com/vi/qtRcFEx31lY/sddefault.jpg,640,480,https://i.ytimg.com/vi/qtRcFEx31lY/maxresdefault.jpg,1280,720,youtube#video,qtRcFEx31lY,qtRcFEx31lY,2023-10-27T10:48:59Z,public
youtube#playlistItem,j4gJnLThJHuKNmzr-Mjr9BkbFqc,UEw2YVlKXzB6SjR1QjFkWE5XdG1pc25YNTFoTVN4ckVfai4wMTcyMDhGQUE4NTIzM0Y5,2023-10-27T14:25:11Z,UCBbHCj7kUogAMFyBAzzzfUw,Run Workflow,"This video will give you a quick introduction to Run Workflow.
youtube#playlistItem,riJTrETsq7lpFfnU0rCzBJMcggo,UEw2YVlKXzB6SjR1QjFkWE5XdG1pc25YNTFoTVN4ckVfai4wMTcyMDhGQUE4NTIzM0Y5,2023-10-27T14:25:11Z,UCBbHCj7kUogAMFyBAzzzfUw,Run Workflow,"This video will give you a quick introduction to Run Workflow.

WDL Workflows Guide: https://jhudatascience.org/AnVIL_Book_WDL

8 changes: 4 additions & 4 deletions resources/youtube_demos_data.csv
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
kind,etag,id,snippet.publishedAt,snippet.channelId,snippet.title,snippet.description,snippet.channelTitle,snippet.playlistId,snippet.position,snippet.videoOwnerChannelTitle,snippet.videoOwnerChannelId,snippet.thumbnails.default.url,snippet.thumbnails.default.width,snippet.thumbnails.default.height,snippet.thumbnails.medium.url,snippet.thumbnails.medium.width,snippet.thumbnails.medium.height,snippet.thumbnails.high.url,snippet.thumbnails.high.width,snippet.thumbnails.high.height,snippet.thumbnails.standard.url,snippet.thumbnails.standard.width,snippet.thumbnails.standard.height,snippet.thumbnails.maxres.url,snippet.thumbnails.maxres.width,snippet.thumbnails.maxres.height,snippet.resourceId.kind,snippet.resourceId.videoId,contentDetails.videoId,contentDetails.videoPublishedAt,status.privacyStatus
youtube#playlistItem,LZXy1EhIbWfad4Kco1qQXrUIzy0,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS41NkI0NEY2RDEwNTU3Q0M2,2023-03-23T15:54:43Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Introduction to AnVIL - 2023/03/23,"Stephen Mosher kicked off our *new* AnVIL Demos, sharing an Introduction to AnVIL, describing the context of the research environment AnVIL fits into, ways it support researchers and meets common computational genomics needs, and ways users can get started and find support.
youtube#playlistItem,MhZnxh_pOKRPAYHhhTJbFiL0n1Y,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS41NkI0NEY2RDEwNTU3Q0M2,2023-03-23T15:54:43Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Introduction to AnVIL - 2023/03/23,"Stephen Mosher kicked off our *new* AnVIL Demos, sharing an Introduction to AnVIL, describing the context of the research environment AnVIL fits into, ways it support researchers and meets common computational genomics needs, and ways users can get started and find support.

Let us know what you think and share your feedback: https://forms.gle/AK12iVXTjsB7yCUUA.
More about AnVIL Demos and today's Q&A: https://help.anvilproject.org/t/introducing-anvil-demos-starting-march-23-2023/153",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,0,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/fcMUU7NrEeM/default.jpg,120,90,https://i.ytimg.com/vi/fcMUU7NrEeM/mqdefault.jpg,320,180,https://i.ytimg.com/vi/fcMUU7NrEeM/hqdefault.jpg,480,360,https://i.ytimg.com/vi/fcMUU7NrEeM/sddefault.jpg,640,480,https://i.ytimg.com/vi/fcMUU7NrEeM/maxresdefault.jpg,1280,720,youtube#video,fcMUU7NrEeM,fcMUU7NrEeM,2023-03-23T15:58:12Z,public
@@ -10,7 +10,7 @@ Demo workspace: https://anvil.terra.bio/#workspaces/anvil-workshop/HPRC-Giraffe-
AnVIL Project homepage: https://anvilproject.org/
AnVIL in 2 minutes playlist: https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio
Getting Started on AnVIL Book: https://jhudatascience.org/AnVIL_Book_Getting_Started/",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,1,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/0PRCFkLZOeo/default.jpg,120,90,https://i.ytimg.com/vi/0PRCFkLZOeo/mqdefault.jpg,320,180,https://i.ytimg.com/vi/0PRCFkLZOeo/hqdefault.jpg,480,360,https://i.ytimg.com/vi/0PRCFkLZOeo/sddefault.jpg,640,480,https://i.ytimg.com/vi/0PRCFkLZOeo/maxresdefault.jpg,1280,720,youtube#video,0PRCFkLZOeo,0PRCFkLZOeo,2023-04-27T17:50:54Z,public
youtube#playlistItem,24_tczUoEnep3QHlmYDXegrwz-g,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS4wMTcyMDhGQUE4NTIzM0Y5,2023-05-18T16:53:02Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: WARP Pipelines in AnVIL/Terra - 2023/05/18,"Liz Kiernan and Kaylee Mathews from the Broad Institute described WARP Pipelines, which are workflows written in the Workflow Description Language (WDLs) and optimized for the cloud. They shared where to find them, how to use them in example and your own analyses, and how to learn more about them.
youtube#playlistItem,zJGnAVq8F0Mz7-2TEixW6ifcBMI,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS4wMTcyMDhGQUE4NTIzM0Y5,2023-05-18T16:53:02Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: WARP Pipelines in AnVIL/Terra - 2023/05/18,"Liz Kiernan and Kaylee Mathews from the Broad Institute described WARP Pipelines, which are workflows written in the Workflow Description Language (WDLs) and optimized for the cloud. They shared where to find them, how to use them in example and your own analyses, and how to learn more about them.

Relevant Links:
- Demo workspace: https://anvil.terra.bio/#workspaces/featured-workspaces-hca/HCA_Optimus_Pipeline
@@ -19,7 +19,7 @@ Relevant Links:
- Getting Started on AnVIL Book: https://jhudatascience.org/AnVIL_Book_Getting_Started/
- Q&A notes: https://help.anvilproject.org/t/anvil-demo-warp-pipelines-in-anvil-terra-on-may-18/161/2",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,2,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/omaVZgU4aJ0/default.jpg,120,90,https://i.ytimg.com/vi/omaVZgU4aJ0/mqdefault.jpg,320,180,https://i.ytimg.com/vi/omaVZgU4aJ0/hqdefault.jpg,480,360,https://i.ytimg.com/vi/omaVZgU4aJ0/sddefault.jpg,640,480,https://i.ytimg.com/vi/omaVZgU4aJ0/maxresdefault.jpg,1280,720,youtube#video,omaVZgU4aJ0,omaVZgU4aJ0,2023-05-19T15:11:19Z,public
youtube#playlistItem,vIgtX3uoMiU6A3UQ3itjxbfSpT4,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS41MjE1MkI0OTQ2QzJGNzNG,2023-06-23T20:40:16Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: How to combine data across workspaces - 06/22/2023,Frederick Tan from Carnegie Institution demonstrated the capability to combine datasets in AnVIL and how to leverage workflows to scale your analyses using WDL in AnVIL.,AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,3,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/1vz4kupdkms/default.jpg,120,90,https://i.ytimg.com/vi/1vz4kupdkms/mqdefault.jpg,320,180,https://i.ytimg.com/vi/1vz4kupdkms/hqdefault.jpg,480,360,https://i.ytimg.com/vi/1vz4kupdkms/sddefault.jpg,640,480,https://i.ytimg.com/vi/1vz4kupdkms/maxresdefault.jpg,1280,720,youtube#video,1vz4kupdkms,1vz4kupdkms,2023-06-23T20:42:48Z,public
youtube#playlistItem,idmcGNXH3rVlI-qao17dsvJfA94,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS4wOTA3OTZBNzVEMTUzOTMy,2023-08-31T17:18:37Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Interactive Genomic Data Science with Bioconductor - 07/20/2023,"Vincent Carey from Harvard Medical School shared a demo running RStudio and Bioconductor in AnVIL to:
youtube#playlistItem,V7JmvbKHfaQ71h-Z27irdJ_WruY,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS4wOTA3OTZBNzVEMTUzOTMy,2023-08-31T17:18:37Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Interactive Genomic Data Science with Bioconductor - 07/20/2023,"Vincent Carey from Harvard Medical School shared a demo running RStudio and Bioconductor in AnVIL to:
- Get acquainted with the cloud environment selection process, RStudio's git interface, and precompiled binaries
- Have a look at an app that helps with ontologically aware interrogation of the EBI/NHGRI GWAS catalog
- Explore human pangenome representation and variant calling with the AnVIL package and a copy of the HPRC workspace
@@ -37,7 +37,7 @@ Relevant Links:
- AnVIL in 2 minutes playlist: https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio
- Getting Started on AnVIL Book: https://jhudatascience.org/AnVIL_Book_Getting_Started
- Q&A: https://help.anvilproject.org/t/anvil-demo-running-galaxy-in-anvil-on-august-31/168/1",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,5,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/_uT0IWL1wso/default.jpg,120,90,https://i.ytimg.com/vi/_uT0IWL1wso/mqdefault.jpg,320,180,https://i.ytimg.com/vi/_uT0IWL1wso/hqdefault.jpg,480,360,https://i.ytimg.com/vi/_uT0IWL1wso/sddefault.jpg,640,480,https://i.ytimg.com/vi/_uT0IWL1wso/maxresdefault.jpg,1280,720,youtube#video,_uT0IWL1wso,_uT0IWL1wso,2023-08-31T17:45:39Z,public
youtube#playlistItem,5qU3H0_L4q49LuYrBA8zRBnHqd0,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS41MzJCQjBCNDIyRkJDN0VD,2023-09-21T17:28:04Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Epigenetics in AnVIL - 2023/09/21,"In this demo, Ava Hoffman introduced fundamental concepts of epigenetics data analysis and demonstrated how to visualize ChIP-Seq experiment data using RStudio in AnVIL.
youtube#playlistItem,GAwmGykkVSAThs4FRVKDVrb6RTk,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS41MzJCQjBCNDIyRkJDN0VD,2023-09-21T17:28:04Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Epigenetics in AnVIL - 2023/09/21,"In this demo, Ava Hoffman introduced fundamental concepts of epigenetics data analysis and demonstrated how to visualize ChIP-Seq experiment data using RStudio in AnVIL.

Learn more about AnVIL Demos here: https://anvilproject.org/events/anvil2023-september-demos
Give us feedback: https://tinyurl.com/mtxd79wm
4 changes: 2 additions & 2 deletions resources/youtube_gdscn_sars_data.csv
Original file line number Diff line number Diff line change
@@ -6,7 +6,7 @@ Check out the activity! https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnV
AnVIL Help: https://help.anvilproject.org/

Use the slides from this video: https://docs.google.com/presentation/d/1OgXNEXPKhiNQvl9B6Zd1oZqICae_vVTZvDG6DEEO1tk/edit?usp=sharing",Genomic Data Science Community Network,PLzgm426KgvriINOUpgrBjTZXHIDZXOOz0,0,Genomic Data Science Community Network,UCpPm7MPoB8uOFSN-6xeCaLw,https://i.ytimg.com/vi/OFGa6x2bGHs/default.jpg,120,90,https://i.ytimg.com/vi/OFGa6x2bGHs/mqdefault.jpg,320,180,https://i.ytimg.com/vi/OFGa6x2bGHs/hqdefault.jpg,480,360,https://i.ytimg.com/vi/OFGa6x2bGHs/sddefault.jpg,640,480,youtube#video,OFGa6x2bGHs,OFGa6x2bGHs,2023-03-06T16:52:44Z,public
youtube#playlistItem,wAJKmlF0PWr02FXxgx21mPYdwtI,UEx6Z200MjZLZ3ZyaUlOT1VwZ3JCalRaWEhJRFpYT096MC4xMkVGQjNCMUM1N0RFNEUx,2023-03-02T14:21:24Z,UCpPm7MPoB8uOFSN-6xeCaLw,What is a variant?,"In this video, we’ll talk about genetic variants.
youtube#playlistItem,GssO-EQvHSryRYD7h7A7ILx3xJM,UEx6Z200MjZLZ3ZyaUlOT1VwZ3JCalRaWEhJRFpYT096MC4xMkVGQjNCMUM1N0RFNEUx,2023-03-02T14:21:24Z,UCpPm7MPoB8uOFSN-6xeCaLw,What is a variant?,"In this video, we’ll talk about genetic variants.

Genetic variants are small changes in the DNA somewhere inside the genome. These variants create a lot of the diversity we see in the natural world, such as different eye and skin colors or susceptibility to disease.

@@ -35,7 +35,7 @@ Check out the activity! https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnV
AnVIL Help: https://help.anvilproject.org/

Use the slides from this video: https://docs.google.com/presentation/d/1SxbYQyzJ19AmTj2ULhkxv9VZTEZjG2xePaVLTN7z52Q/edit?usp=sharing",Genomic Data Science Community Network,PLzgm426KgvriINOUpgrBjTZXHIDZXOOz0,3,Genomic Data Science Community Network,UCpPm7MPoB8uOFSN-6xeCaLw,https://i.ytimg.com/vi/MEZP_AzlLyg/default.jpg,120,90,https://i.ytimg.com/vi/MEZP_AzlLyg/mqdefault.jpg,320,180,https://i.ytimg.com/vi/MEZP_AzlLyg/hqdefault.jpg,480,360,https://i.ytimg.com/vi/MEZP_AzlLyg/sddefault.jpg,640,480,youtube#video,MEZP_AzlLyg,MEZP_AzlLyg,2022-04-21T18:06:04Z,public
youtube#playlistItem,--hFQ7O8XOYT77GXdItMME1JKX8,UEx6Z200MjZLZ3ZyaUlOT1VwZ3JCalRaWEhJRFpYT096MC5DQUNERDQ2NkIzRUQxNTY1,2023-03-02T14:45:29Z,UCpPm7MPoB8uOFSN-6xeCaLw,Cloud computing,"In this video, we talk about how cloud computing and genetic variant detection work together.
youtube#playlistItem,P4IHYZpOsQwrRN9CkPxSYm9pjhI,UEx6Z200MjZLZ3ZyaUlOT1VwZ3JCalRaWEhJRFpYT096MC5DQUNERDQ2NkIzRUQxNTY1,2023-03-02T14:45:29Z,UCpPm7MPoB8uOFSN-6xeCaLw,Cloud computing,"In this video, we talk about how cloud computing and genetic variant detection work together.

Cloud computing is a powerful way to perform cutting-edge data science work, without having to worry about having the right equipment. After learning the basics, anyone with an internet connection can use cloud computing to look for genomic variants.

2 changes: 1 addition & 1 deletion resources/youtube_gdscn_soil_project_data.csv
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
kind,etag,id,snippet.publishedAt,snippet.channelId,snippet.title,snippet.description,snippet.channelTitle,snippet.playlistId,snippet.position,snippet.videoOwnerChannelTitle,snippet.videoOwnerChannelId,snippet.thumbnails.default.url,snippet.thumbnails.default.width,snippet.thumbnails.default.height,snippet.thumbnails.medium.url,snippet.thumbnails.medium.width,snippet.thumbnails.medium.height,snippet.thumbnails.high.url,snippet.thumbnails.high.width,snippet.thumbnails.high.height,snippet.thumbnails.standard.url,snippet.thumbnails.standard.width,snippet.thumbnails.standard.height,snippet.thumbnails.maxres.url,snippet.thumbnails.maxres.width,snippet.thumbnails.maxres.height,snippet.resourceId.kind,snippet.resourceId.videoId,contentDetails.videoId,contentDetails.videoPublishedAt,status.privacyStatus
youtube#playlistItem,L3KXAqYbueEGqPi4ei0KcBk8xdI,UEx6Z200MjZLZ3ZyaGhlbG9CZGxTV3NoTTl2MlZ2SkVjWC41NkI0NEY2RDEwNTU3Q0M2,2023-10-16T20:48:52Z,UCpPm7MPoB8uOFSN-6xeCaLw,GDSCN Soil Sampling - Composite Sample Homogenization,"This video shows you how to homogenize your composite soil sample.
youtube#playlistItem,w3DM7CzXa7h-KX3oCUmgz1kqMHg,UEx6Z200MjZLZ3ZyaGhlbG9CZGxTV3NoTTl2MlZ2SkVjWC41NkI0NEY2RDEwNTU3Q0M2,2023-10-16T20:48:52Z,UCpPm7MPoB8uOFSN-6xeCaLw,GDSCN Soil Sampling - Composite Sample Homogenization,"This video shows you how to homogenize your composite soil sample.

For more, check out the ""Materials"" tab on https://gdscnsoil.fredhutch.org/.",Genomic Data Science Community Network,PLzgm426KgvrhheloBdlSWshM9v2VvJEcX,0,Genomic Data Science Community Network,UCpPm7MPoB8uOFSN-6xeCaLw,https://i.ytimg.com/vi/bOoZP0UXrt0/default.jpg,120,90,https://i.ytimg.com/vi/bOoZP0UXrt0/mqdefault.jpg,320,180,https://i.ytimg.com/vi/bOoZP0UXrt0/hqdefault.jpg,480,360,https://i.ytimg.com/vi/bOoZP0UXrt0/sddefault.jpg,640,480,https://i.ytimg.com/vi/bOoZP0UXrt0/maxresdefault.jpg,1280,720,youtube#video,bOoZP0UXrt0,bOoZP0UXrt0,2023-10-16T21:06:23Z,public
youtube#playlistItem,C4B1bonxkS0VNNlJXs1QlfjoHrU,UEx6Z200MjZLZ3ZyaGhlbG9CZGxTV3NoTTl2MlZ2SkVjWC4yODlGNEE0NkRGMEEzMEQy,2023-10-16T21:11:46Z,UCpPm7MPoB8uOFSN-6xeCaLw,GDSCN Soil Sampling - Preparing DNA Sample,"This video shows you how to prepare the DNA sample from the composite soil sample.
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