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Formatting and adding intro #6

Merged
merged 24 commits into from
Jan 29, 2024
Merged

Formatting and adding intro #6

merged 24 commits into from
Jan 29, 2024

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ehumph
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@ehumph ehumph commented Jan 24, 2024

This PR creates the basic format for the guide and also adds a general intro to the BioDIGS project.

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github-actions bot commented Jan 24, 2024

⚠️ Check: spelling errors did not fully run! Go to the Actions tab to find more info.
Post issue to https://github.com/jhudsl/OTTR_Template/issues if this seems incorrect.
Comment updated at 2024-01-24 with changes from bbbbfb7

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github-actions bot commented Jan 24, 2024

No broken urls! 🎉
Comment updated at 2024-01-26 with changes from 02ae56c

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github-actions bot commented Jan 24, 2024

Re-rendered previews from the latest commit:

Updated at 2024-01-26 with changes from 02ae56c

@ehumph ehumph requested a review from avahoffman January 24, 2024 22:51
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avahoffman commented Jan 25, 2024

Looking great so far!! Can I help with any of the themeing or other stuff? We'll want to make sure we set up Google Analytics, feedback, etc


# Background

One critical aspect of an undergraduate STEM education is hands-on research. Undergraduate research experiences enhance what students learn in the classroom as well as increase a student's interest in pursuing STEM careers ^1. It can also lead to improved scientific reasoning and increased academic performance overall ^2. However, many students at underresourced institutions like community colleges, Historically Black Colleges and Universities (HBCUs), tribal colleges and universities, and Hispanic-serving institutions have limited access to research opportunities compared to their cohorts at larger four-year colleges and R1 institutions. These students are also more likely to belong to groups that are already under-represented in STEM disciplines, particularly genomics and data science ^3 ^4.
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Citations should be like [@ref] and should be flushed out in the accompanying book.bib file. See recent example here: https://github.com/fhdsl/AI_for_Decision_Makers/blob/main/01c-AI_Possibilities-how_ai_works.Rmd

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Bah. I forgot this isn't just a .md file. Thanks!


## Soil sampling

Soil sampling for this project was done by both faculty and student volunteers from schools that aren't traditional R1 research institutions. Many of the faculty are also members of the GDSCN.
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Could add some reference to the R1, etc tier system. I think there's a ref in the GDSCN Genome Research paper that could help!

- **New York, NY**: Guttman Community COllege CUNY
- **Petersburg, VA**: Virginia State University
- **Seattle, WA**: North Seattle College, Pierce College
- **Tsaile, AZ**: Diné College
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Could we embed the map from the gdscn website?? 😄

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Ooo, I love this idea, although this is the list of everyone who has said they will sample and has gotten a kit, not everyone who has submitted metadata, so there are places on this list that have not yet been collected. I can remove those places without sample metadata to make it cleaner

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# Student Guide

Modules aimed at students in a course or workshop.
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I'm guessing we'll clean some of this up :)

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Yup! That is strictly there are a placeholder. I will clean it up when I find out what exactly we can have them do for data exploration (:

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Yeah, this is really just a placeholder for now.

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Co-authored-by: AM Hoffman <avamariehoffman@gmail.com>
Co-authored-by: AM Hoffman <avamariehoffman@gmail.com>
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ehumph commented Jan 26, 2024

Looking great so far!! Can I help with any of the themeing or other stuff? We'll want to make sure we set up Google Analytics, feedback, etc

Yes, please! I would LOVE if you can help with the theming, Google analytics, feedback, and everything else I'm forgetting about. I thought I'd made the necessary changes to get the GDSCN theming (I changed the index.Rmd) but I am clearly forgetting a step!

@ehumph ehumph merged commit 407ba6e into main Jan 29, 2024
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@ehumph ehumph deleted the Formatting-the-bookdown branch January 29, 2024 21:26
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2 participants