MacSyFinder

MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

Citation

Abby SS, Néron B, Ménager H, Touchon M, Rocha EPC (2014). MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems. PLoS ONE 9(10): e110726. doi:10.1371/journal.pone.0110726 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110726

Download distribution

Installation from distribution

1. Uncompress and untar the package:

   tar -xzf macsyfinder-x.x.tar.gz

2. Go to the macsyfinder directory

   cd macsyfinder-1.0

3. Build and install

   python setup.py build

   python setup.py test -vv

   python setup.py install

   to see all installation options "python setup.py --help"

See the INSTALL file for more details.

Installation from repository

Please be careful, MacSyView has its own repository: https://github.com/gem-pasteur/macsyview

Unit tests with Travis-CI

Documentation

You will find complete documentation for setting up your project at the Read the Docs site.

![Doc] (https://readthedocs.org/projects/macsyfinder/badge/?version=latest)