Neurosift is a browser-based tool designed for the visualization of neuroscience data with a focus on NWB (Neurodata Without Borders) files, and enables interactive exploration of the DANDI Archive and OpenNeuro online repositories.
This branch contains the new (v2) version of neurosift. The previous (v1) version is available on the main branch.
The live application is hosted at https://neurosift.app.
Follow these steps to install and run the app locally in development mode:
-
Clone the repository:
git clone <repository-url> cd neurosift
-
Install dependencies:
npm install
-
Start the development server:
npm run dev
The development server typically runs on http://localhost:5173.
Pull requests are welcomed. If you have suggestions, improvements, or bug fixes, please feel free to open a pull request.
This project uses pre-commit hooks to automatically check format code before each commit. The formatting includes:
- Python code formatting using black
- TypeScript/JavaScript code formatting using npm scripts
To set up the pre-commit hooks after cloning the repository:
- Install pre-commit:
pip install pre-commit- Install the git hook scripts:
pre-commit installAfter this setup, code will be automatically checked for formatting when you make a commit.
Running ./devel/format_code.sh which will format all code in the repository.
The following table provides example visualizations of different neurodata types through Neurosift:
| Neurodata Type | Name | Dandiset ID | Example Link |
|---|---|---|---|
| Image | maximum_intensity_projection | 000728 | View |
| Images | StimulusPresentation/indexed_images | 000673 | View |
| Units | units | 000409 | View |
| ElectricalSeries | neurodata_type: ElectricalSeries | 000409 | View |
| TimeIntervals / Units / PSTH | /intervals/trials | 000409 | View |
| SpatialSeries | pupil_location_spherical | 000728 | View |
| LabeledEvents | RewardEventsLinearTrack | 000568 | View |
| ImageSegmentation | ophys/ImageSegmentation | - | View |
| TwoPhotonSeries | raw_suite2p_motion_corrected | 000871 | View |
| TimeIntervals | /intervals/epochs | 000954 | View |
| TimeIntervals / FiberPhotometryResponseSeries / TrialAlignedSeries | DfOverFFiberPhotometryResponseSeries | 001084 | View |
| BehavioralEvents | behavioral_events | 000115 | View |
This project is licensed under the Apache 2.0 License.