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@fls-bioinformatics-core

Bioinformatics Core Facility in the Faculty of Biology Medicine and Health at the University of Manchester

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  1. auto_process_ngs Public

    Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

    Python 9 7

  2. pegs Public

    PEGS: Peak-set Enrichment of Gene-Sets

    Python 2 1

  3. genomics Public

    Scripts, utilities and programs for genomic bioinformatics.

    Python 81 37

  4. RnaChipIntegrator Public

    RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify th…

    Python 5 1

Repositories

Showing 10 of 20 repositories
  • auto_process_ngs Public

    Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

    Python 9 7 75 2 Updated Feb 19, 2025
  • genomics Public

    Scripts, utilities and programs for genomic bioinformatics.

    Python 81 37 12 2 Updated Feb 10, 2025
  • ngsarchiver Public

    Utility to archive and manage BCF NGS data

    Python 0 BSD-3-Clause 0 0 0 Updated Feb 7, 2025
  • Site2Target Public

    An R package to associate sets of sites/peaks to target genes

    R 0 0 0 0 Updated Jan 15, 2025
  • sc-gex Public

    BCF's single-cell GEX scripts

    R 0 0 0 0 Updated Oct 28, 2024
  • RnaChipIntegrator Public

    RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

    Python 5 Artistic-2.0 1 4 0 Updated Sep 4, 2024
  • galaxy-tools Public

    FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

    Shell 14 11 3 4 Updated Mar 20, 2024
  • pegs Public

    PEGS: Peak-set Enrichment of Gene-Sets

    Python 2 BSD-3-Clause 1 1 0 Updated Dec 7, 2023
  • NanoDam_analysis-sge Public Forked from AHBrand-Lab/NanoDam_analysis

    R markdowns & scripts accompanying 'Tang, J et al., 2021, bioRxiv'.

    Python 0 GPL-3.0 2 0 0 Updated Nov 27, 2023
  • HTML 0 0 0 0 Updated Jan 26, 2022