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Updated description of pull subcommand #7

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7 changes: 5 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -87,8 +87,11 @@ following:
and the USA is in North America) and the relationships between country names
(United Arab Emirates) and ISO country codes (ARE).

* Retrieve and process all Influenza A Virus data from GenBank. This step will
take a long time. Most of a day. There are two ways to speed this up. First,
* Retrieve and process Influenza A Virus data from GenBank from the current month.
To build the database from nothing call `octofludb pull --nmonths=360`.
This will pull all GenBank data that has been released in the last 30
years (which should be all of it). A comprehensive pull will take a long time.
Most of a day. There are two ways to speed this up. First,
if you are building a new repo, and `octofludb`'s GenBank processing code
hasn't changed, you can go to your `~/.octofludb/build` directory and run
`octofludb upload .gb*ttl`. This will upload all the past GenBank turtle
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