adding info about changes

.zenodo.json

@@ -2,7 +2,7 @@
     "description": "<p>MpGAP is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. It is an easy to use pipeline that adopts well known software for _de novo_ genome assembly of Illumina, Pacbio and Oxford Nanopore sequencing data through illumina only, long reads only or hybrid modes.</p>",
     "license": "other-open", 
     "title": "fmalmeida/MpGAP: A generic multi-platform genome assembly pipeline", 
-    "version": "v3.1.2", 
+    "version": "v3.1.3", 
     "upload_type": "software",
     "creators": [
         {

README.md

@@ -46,7 +46,7 @@ Are you curious about changes between releases? See the [changelog](markdown/CHA
 * I **strongly**, **vividly**, **mightily** recommend the usage of the latest versions hosted in master branch, which is nextflow's default.
     + The latest will always have support, bug fixes and generally maitain the same processes (I mainly add things instead of removing) that also were in previous versions.
     + But, if you **really** want to execute an earlier release, please [see the instructions for that](markdown/earlier_releases_instructions.md).
-* Versions below 2.0 are no longer supported.
+* Versions below 3.0 are no longer supported.
 
 ### Further reading
 

markdown/CHANGELOG.md

@@ -2,6 +2,14 @@
 
 The tracking for changes started in v2.
 
+## v3.1.3 -- [2022-Mar-03]
+
+Although Megahit was already present inside the docker image and the core of the pipeline as it was used by [Shovill](https://github.com/tseemann/shovill), Shovill is an assembler focused in bacterias, and, in their manual, they instruct users to run [Megahit](https://github.com/voutcn/megahit) directly when working with non-bacterial samples.
+
+Thus, we've seen the need to incorporate a new module that runs Megahit directly as well instead of only underneath Shovill.
+
+> Nothing has changed in terms of how tools are called and used, thus the docker image still the same. In fact, patch/fix releases (x.x.x) will always use the docker from breaking/features release (x.x)
+
 ## v3.1.2 -- [2022-Feb-28]
 
 This version addresses the changes discussed in [issue #33](https://github.com/fmalmeida/MpGAP/issues/33). It has three main changes:

nextflow.config

@@ -96,5 +96,5 @@ manifest {
   homePage        = "https://github.com/fmalmeida/mpgap"
   mainScript      = "main.nf"
   nextflowVersion = ">=20.10.0"
-  version         = "3.1.2"
+  version         = "3.1.3"
 }