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@fmalmeida fmalmeida released this 03 Sep 19:06
· 190 commits to master since this release
v3.1.4
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Release notes

v3.1.4 -- [2022-Sep-03]

This version addresses the changes discussed in #36, #37 and #38.
Its main changes are:

  • Solving the problem of loading a parameter that accepts either integer or string by removing check-up from JSON schema and creating a customized check-up.
  • Added 'error_retry' label to haslr as sometimes it radomnly fails.
  • added a .gitpod.yml
  • Customized labels to ask for a little bit more on first run
  • Added a module config for quast to ask for more memory and cpus on first run, removing it from 'process_low' label
  • Added a simple command in pilon module to ensure it starts with a "fresh" output dir to place results
  • Added a new option called --skip_raw_assemblies_polishing which, when running hybrid strategy 2 avoids polishing raw long reads assemblies with short reads, instead, it only polishes the assemblies that have been already polished with medaka.
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