BANDA NDA data scoring repository

This repository contains scripts to combine and score behavioral data from the BANDAImgManifestBeh NDA package v1.0 for the BANDA project (Boston Adolescent Neuroimaging of Depression and Anxiety), sometimes referred to as Human Connectome Project Related to Disease (HCP) or HCP for Anxiety and Depression in Adolescence.

Scripts info

• inputs: BANDAImgManifestBeh/*txt files include demographic, behavioral, and cognitive data. Most of these data are item-level/raw, but some already aggregated (e.g., PEN and NIHToolbox). These data need to be downloaded directly from NDA
• combine_score_banda_nda_behave_data.ipynb is a wrapper script
  • loads all .txt files
  • combines them (by id, respondent, timepoint etc)
  • cleans dataframe (e.g. from missing values and empty columns)
  • calls in myfx_scoring.py to generate subscales and total scores of included questionnaires
  • (optional) removes item-level info, calculates number of NANs, calculates number of theoretical items (for each subject for each subscale)
• myfx_scoring.py list of functions used to score questionnaires
  • grabs item-level columns
  • generates subscales
  • removes item-level cols
• output: one dataframe with scored data from all files (or custom set) included in the BANDAImgManifestBeh datapackage

Questionnaires supported

• bisbas
• cbcl (scoring info is proprietary so not including here)
• chapman handedness
• cssrs
• ksads01 (technically not a scoring, here just creating grouping based on specific aims of our study)
• ksadsp201 (technically not a scoring, currently dropping this info)
• masq
• mfq
• nffi
• rbqa
• rcads
• rmbi
• shaps
• stai (work in progress)
• strain (scoring info is proprietary so not including here)
• tanner
• wasi
• PENN and NIH tasks (not scoring, just relabelling columns)

More dataset info

BANDA project
BANDA NDA download instructions
BANDA NDA release manual
BANDA crosswalk file

Papers

Protocols and Data Release Papers

Hubbard et al. (2024) Scientific Data: https://doi.org/10.1038/s41597-024-03629-x
Hubbard et al. (2020) NeuroImage Clinical: https://doi.org/10.1016/j.nicl.2020.102240
Siless et al. (2020) NeuroImage Clinical: https://doi.org/10.1016/j.nicl.2020.102242

Others using BANDA data

Hubbard et al., (2023) Clinical Psychological Science :https://doi.org/10.1177/21677026221079628
Auerbach et al., (2022) JAACAP: https://doi.org/10.1016/j.jaac.2021.04.014
Lee et al., (2021) The Cerebellum: https://doi.org/10.1007/s12311-020-01213-8
Tozzi et al., (2021) NeuroImage: https://doi.org/10.1016/j.neuroimage.2021.118694