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Address review comments. #22

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Oct 31, 2017
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Address review comments. #22

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2 changes: 1 addition & 1 deletion adam-r/bdgenomics.adam/DESCRIPTION
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Expand Up @@ -2,7 +2,7 @@ Package: bdgenomics.adam
Type: Package
Version: 0.23.0
Title: R Frontend for Big Data Genomics/ADAM
Description: The SparkR package provides an R Frontend for Apache Spark.
Description: ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet.
Author: Big Data Genomics
Maintainer: Frank Austin Nothaft <fnothaft@alumni.stanford.edu>
Authors@R: c(person("Frank", "Nothaft", role = c("aut", "cre"),
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14 changes: 11 additions & 3 deletions docs/source/02_installation.md
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Expand Up @@ -121,9 +121,17 @@ mvn -Pr package

This will enable the `adam-r` module as part of the ADAM build. This module
uses Maven to invoke the `R` executable to build the `bdg.adam` package and run
tests. Beyond having `R` installed, we require you to have the `SparkR` package
installed, and the ADAM JARs must be built and provided to `SparkR`. This can be
done with the following bash commands:
tests. The build requires the `testthat`, `devtools` and `roxygen` packages

```bash
R -e "install.packages('testthat', repos='http://cran.rstudio.com/')"
R -e "install.packages('roxygen2', repos='http://cran.rstudio.com/')"
R -e "install.packages('devtools', repos='http://cran.rstudio.com/')"
```

The build also requires you to have the `SparkR` package installed, and the
ADAM JARs must be built and provided to `SparkR`. This can be done with the
following bash commands:

```bash
# put adam jar on the SparkR path
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