Hotfix for ADAM/BAM output issue.

See: * bigdatagenomics/adam#962 * BD2KGenomics/toil-scripts#117
fnothaft · Feb 26, 2016 · 8f4c8e0 · 8f4c8e0
1 parent bd41c08
commit 8f4c8e0
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/adam/Makefile b/adam/Makefile
@@ -6,7 +6,7 @@ runtime_fullpath = $(realpath ${runtime_path})
 build_tool = runtime-container.DONE
 build_number ?= none
 git_commit ?= $(shell git rev-parse HEAD)
-nametag = quay.io/ucsc_cgl/adam:cd6ef41
+nametag = quay.io/ucsc_cgl/adam:962-ehf
 
 # Steps
 build: ${build_output} ${build_tool}

diff --git a/adam/build/Dockerfile b/adam/build/Dockerfile
@@ -5,9 +5,10 @@ MAINTAINER Frank Austin Nothaft, fnothaft@berkeley.edu
 WORKDIR /home
 
 # clone adam
-RUN git clone https://github.com/bigdatagenomics/adam.git
+RUN git clone https://github.com/fnothaft/adam.git
 
 # build adam
 WORKDIR /home/adam
-RUN git checkout cd6ef4162ae97460059ef067d21bbed7e060b289
+RUN git checkout 962-ehf
+
 RUN /opt/apache-maven-3.3.3/bin/mvn package -DskipTests