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focyte/README.md

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  • Hi, I’m John @Focyte
  • A research scientist with 15+ years experience in the fields of cancer, immunology, and RNA biology
  • I use R and Python to process and analyse genomic data
  • Using Linux Command Line tools and Bash scripting I have worked with Next Generation Sequencing (NGS) pipeliens
  • Through collaborations with data scientists I have also tried some feature selection methods and machine learning

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  1. nf-DNA-Variants nf-DNA-Variants Public

    A Nextflow pipeline for processing and calling of variants: FASTA to VCF

    Nextflow

  2. Bash-ATACseq Bash-ATACseq Public

    Pipeline for analysing ATAC-seq data from raw fastq files to called genomic peaks

    Shell

  3. Bash-RNAseq Bash-RNAseq Public

    Pipelines for analysis of RNA sequencing data using bash scripting of command line tools, Python and R scripts

    Shell 2

  4. GSEA GSEA Public

    Scripts to perform gene set enrichment analysis (GSEA)

    R