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Fix span tag id=undefined and fix /api/qiskit/index entry (Qiskit#500)
This PR fixes the issue with the undefined span IDs when generating the documentation and transforms the `/api/qiskit/index` entry in the toc file to `/api/qiskit`. A new test has been added to verify we don't generate span tags with an undefined id. The Qiskit docs have been regenerated to verify the correct behavior of the script for the current version. The changes in the docs files are empty lines matching the great work done by @Eric-Arellano in Qiskit#484 removing the tags manually. Closes Qiskit#485 Closes Qiskit#227
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