4.3.7

BugFix

• When switching from exp. to Moran, do not try to add background mutations to cell if they have their last division time greater than TIME_AT_BIRTH. This is a problem when tau-exp is not correctly set.

4.3.6

BugFix

• The previous version didn't match the number of expanded clones from the SDE mode. So, we remove factor 2 and restore solution from v4.3.4, even though we initiate fit variants at size 2 instead of 1 (but has small prob. of p squared).

4.3.5

• reintroduce the factor 2 for the fit variants to avoid "initiating fit variants at size 2, instead of 1"

4.3.4

BugFix

• first sample fit variant (clone) for the parental cell, then assigned both cells to that sampled clone, this justifies removing the factor 2

4.3.3

• create a new type for the probabilities

BugFix

• saving timepoints when the simulations run for only 1 year
• remove the factor 2 for the fit variants introduced by v4.2.0 (not clear why we shouldn't divide by 2)

4.3.2

BugFix

• Do not multiply by tau when converting the rate per year into rate per division

4.3.1

• relax the assumption on the interdivision time: an intervidision time can be 0

4.3.0

• decouple the arrival of fit mutants from the division by implementing an interdivision time

4.2.2

BugFix

• fix the number of cells used to convert the arrival rate of fit mutatants per year to per division (was off by 1)

4.2.1

BugFix

• is_asymmetric was actually symmetric