Skip to content

frattalab/hisat3_snakemake

Folders and files

NameName
Last commit message
Last commit date

Latest commit

Feb 21, 2023
1b82f08 · Feb 21, 2023
Jan 24, 2023
Feb 21, 2023
Oct 20, 2021
Nov 1, 2021
Sep 5, 2022
Dec 5, 2022
Oct 25, 2021
Oct 20, 2021
Nov 2, 2021
Apr 14, 2022
Jan 24, 2023
Feb 21, 2023
Mar 15, 2022
May 27, 2022
Feb 21, 2023
Nov 2, 2021
Mar 15, 2022
May 25, 2022
Apr 6, 2022

Repository files navigation

hisat3_snakemake

A work in progress snakemake pipeline for running HISAT-3N

Also includes some downstream work to turn the transition table into bigwig files, as well a script to add on the extra BAM tags used by SlamDunk

About

quick snakemake pipeline for running hisat3n

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published