Make ...Logged have logging be the default

[rneatherway]

This is more intuitive, and doesn't change the standard behaviour.
Also update remaining references to
checker.GetProjectOptionsFromProjectFile

With these changes I can GenerateDocs on Windows, although not on Mono. On Mono I get:

Compilation errors:
 - warning: (0, 0) Assuming assembly reference `FSharp.Core, Version=4.3.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a' matches assembly `FSharp.Core, Version=4.4.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a'. You may need to supply runtime policy
 - error: (0, 0) Assembly `Microsoft.Build.Utilities.v12.0, Version=12.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a' references `Microsoft.Build.Framework, Version=12.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a' which has a higher version number than imported assembly `Microsoft.Build.Framework, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a'

System.Exception: Generating HTML failed.
  at FSharp.Literate.RazorRender.handleCompile[a] (System.String source, Microsoft.FSharp.Core.FSharpFunc`2 f) <0x40f4ea20 + 0x006a7> in <filename unknown>:0 
  at FSharp.Literate.RazorRender.ProcessFileModel[b] (System.Type modelType, System.Object model, Microsoft.FSharp.Core.FSharpOption`1 properties) <0x40f4e820 + 0x00087> in <filename unknown>:0 
  at FSharp.Literate.Templating.generateFile (Microsoft.FSharp.Core.FSharpOption`1 references, System.String contentTag, IEnumerable`1 parameters, Microsoft.FSharp.Core.FSharpOption`1 templateOpt, System.String output, IEnumerable`1 layoutRoots) <0x40f4b960 + 0x001cb> in <filename unknown>:0 
  at FSharp.Literate.Templating.processFile (Microsoft.FSharp.Core.FSharpOption`1 references, FSharp.Literate.LiterateDocument doc, System.String output, FSharp.Literate.ProcessingContext ctx) <0x40f10cf0 + 0x0043f> in <filename unknown>:0 
...
<snip>