This Repository contains code and simulation for Three way test in submitted paper.
function run first(upload version).R include all the method used for runing simulation(upload version).R .
data_matrix_final.RData is matrix of real data
covariance_matrix_used.RData is the used data for calcualting phenotype covariance
gene list.Data and gene length list.RData cantain genes and their length
Note that final_1kg_genotype_correct.Rdata is not uploaded because of the size. Here we upload one part-version of this data final_1kg_genotype_correct_sub.Rdata and a document on how to access the full data.
Note that these codes are run on R 4.0.2
For any more deatiled questions, please contact budeliang@yeah.net