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Update tests/pipeline/test_MAE.py
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c-mertes authored Jul 21, 2021
1 parent 572beb4 commit 2b4bf5d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion tests/pipeline/test_MAE.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ def test_pipeline_no_run(self,demo_dir):
# run the MAE module using this config_MAE_norun (which should do nothing)
run("awk -v n=3 \'/run: true/ { if (++count == n) sub(/run: true/, \"run: false\"); } 1\' \
config.yaml > config_MAE_norun.yaml ",demo_dir)
pipeline_run = run(["snakemake", "aberrantExpression", f"-j{CORES}", "--configfile", "config_MAE_norun.yaml"], demo_dir)
pipeline_run = run(["snakemake", "mae", f"-j{CORES}", "--configfile", "config_MAE_norun.yaml"], demo_dir)
assert "Nothing to be done." in pipeline_run.stderr
return pipeline_run

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