skip checks if run:false #231
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mumichae
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Jul 15, 2021
c-mertes
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Jul 21, 2021
Major changes included in this update is: * adapt to new snakemake version (#208) * Speedup CI (use micromamba, #218) * Add HTML cutoff for results (#217) * Separate modules (#209) * Update documentation (#228) On top of this many small bug-fixes are included: * #175 #192 #198 #231 * Simplify result reporting Co-authored-by: Vicente Yepez <30469316+vyepez88@users.noreply.github.com> Co-authored-by: Vicente <yepez@in.tum.de> Co-authored-by: Michaela Mueller <51025211+mumichae@users.noreply.github.com> Co-authored-by: Michaela Mueller <mumichae@in.tum.de> Co-authored-by: Smith Nicholas <smith@in.tum.de> Co-authored-by: nickhsmith <smithnickh@gmail.com> Co-authored-by: Christian Mertes <mertes@in.tum.de>
nickhsmith
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Aug 11, 2021
* Update to version 1.1.0 (#229) Major changes included in this update is: * adapt to new snakemake version (#208) * Speedup CI (use micromamba, #218) * Add HTML cutoff for results (#217) * Separate modules (#209) * Update documentation (#228) On top of this many small bug-fixes are included: * #175 #192 #198 #231 * Simplify result reporting Co-authored-by: Vicente Yepez <30469316+vyepez88@users.noreply.github.com> Co-authored-by: Vicente <yepez@in.tum.de> Co-authored-by: Michaela Mueller <51025211+mumichae@users.noreply.github.com> Co-authored-by: Michaela Mueller <mumichae@in.tum.de> Co-authored-by: Smith Nicholas <smith@in.tum.de> Co-authored-by: nickhsmith <smithnickh@gmail.com> Co-authored-by: Christian Mertes <mertes@in.tum.de> * add splitting to MAE filterSNVs.sh * fix broken link and maxVarFreqCohort * fix broken link and maxVarFreqCohort * Update test_MAE.py * code review fixes Co-authored-by: Michaela Mueller <51025211+mumichae@users.noreply.github.com> Co-authored-by: Vicente Yepez <30469316+vyepez88@users.noreply.github.com> Co-authored-by: Vicente <yepez@in.tum.de> Co-authored-by: Michaela Mueller <mumichae@in.tum.de> Co-authored-by: Smith Nicholas <smith@in.tum.de> Co-authored-by: Christian Mertes <mertes@in.tum.de>
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this way if a user doesn't format a module they don't actually want to run it won't fail.