Add BAM iobio visualisation as Interactive Environment #1131
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👍 from me, all looks good. As for the point about pre-pulling the image, I added an item for that on the large GIE issue:
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| # Sets ID and sets up a lot of other variables | ||
| ie_request.load_deploy_config() | ||
| ie_request.attr.docker_port = 80 | ||
| ie_request.attr.import_volume = False |
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Actually it will work without, but this save one volume.
hexylena
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Nov 19, 2015
Add BAM iobio visualisation as Interactive Environment
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Awesome thanks! |
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Cool...can we try it on test? |
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This PR will add the http://bam.iobio.io visualisation for BAM files to Galaxy. To activate this Interactive Environment, you need to adopt your
galaxy.ini.visualization_plugins_directory = config/plugins/visualizationsStarting the first time an IE can cause troubles if the Docker Image pulling takes too long. To prevent this you can simply pull the needed container in advance:
I would like to thank Yi Qiao (@yiq), Chase Miller (chmille4) and Gabor Marth from iobio fame for the fantastic cooperation! This was fun! Also many thanks to @erasche and @jmchilton for improving IE's all over the time!
More to come!
Note: Please open Galaxy with a FQHN -
localhostor127.0.0.1will not work.