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User-based ObjectStore #4840

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wants to merge 20 commits into from
Closed

User-based ObjectStore #4840

wants to merge 20 commits into from

Commits on Dec 12, 2019

  1. Add User-based ObjectStore features.

    @VJalili
    VJalili committed Dec 12, 2019
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Commits on May 5, 2020

  1. Drop AWS S3 support for User-Based ObjectStore:

    @VJalili
    VJalili committed May 5, 2020
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  2. Remove the option of auto user media selection: 

    preference/order on storage media;
    @VJalili
    VJalili committed May 5, 2020
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  3. Change how working directory paths are resolved.

    @VJalili
    VJalili committed May 5, 2020
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  4. Use a property instead of a len check.

    @VJalili
    VJalili committed May 5, 2020
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  5. Pass user to the ObjectStore constructor rather than its methods.

    @VJalili
    VJalili committed May 5, 2020
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  6. Use the property instead of the len check.

    @VJalili
    VJalili committed May 5, 2020
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  7. Change the UBOS migration script number.

    @VJalili
    VJalili committed May 5, 2020
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  8. Replace more count length with accessing property.

    @VJalili
    VJalili committed May 5, 2020
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  9. Add the missing migration script.

    @VJalili
    VJalili committed May 5, 2020
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  10. Fix issues related to failing tests.

    @VJalili
    VJalili committed May 5, 2020
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  11. Reduce user count to 2 in order for tests to pass on CircleCI.

    @VJalili
    VJalili committed May 5, 2020
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  12. Remove database prefix from UBOS path.

    @VJalili
    VJalili committed May 5, 2020
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Commits on May 22, 2020

  1. Merge remote-tracking branch 'upstream/dev' into UserBasedObjectStore2 

    # Conflicts:
#	lib/galaxy/config/__init__.py
#	lib/galaxy/objectstore/__init__.py
#	lib/galaxy/tools/actions/__init__.py
    @VJalili
    VJalili committed May 22, 2020
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Commits on May 23, 2020

  1. Increment migration script number.

    @VJalili
    VJalili committed May 23, 2020
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  2. Update to choose media at the _invoke method.

    @VJalili
    VJalili committed May 23, 2020
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Commits on May 24, 2020

  1. Remove ignore_media, and revert some cosmetic changes.

    @VJalili
    VJalili committed May 24, 2020
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Commits on May 27, 2020

  1. Remove configurations that are auto-defined and set to their defaults.

    @VJalili
    VJalili committed May 27, 2020
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  2. Add storage media path to the test_config_values unit test.

    @VJalili
    VJalili committed May 27, 2020
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Commits on Jun 1, 2020

  1. Update lib/galaxy/webapps/galaxy/api/storage_media.py 

    Co-authored-by: Nuwan Goonasekera <2070605+nuwang@users.noreply.github.com>
    @VJalili @nuwang
    VJalili and nuwang committed Jun 1, 2020
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