mmseqs2

gbouras13 · Aug 23, 2023 · 81fae3b · 81fae3b
1 parent 3d21153
commit 81fae3b
Showing 1 changed file with 18 additions and 18 deletions.
diff --git a/bin/pharokka.py b/bin/pharokka.py
@@ -287,24 +287,24 @@ def main():
     # running mmseqs2 on the 3 databases
     if mmseqs_flag is True:
         logger.info("Starting MMseqs2.")
-        # run_mmseqs(
-        #     db_dir,
-        #     out_dir,
-        #     args.threads,
-        #     logdir,
-        #     gene_predictor,
-        #     args.evalue,
-        #     db_name="PHROG",
-        # )
-        # run_mmseqs(
-        #     db_dir,
-        #     out_dir,
-        #     args.threads,
-        #     logdir,
-        #     gene_predictor,
-        #     args.evalue,
-        #     db_name="CARD",
-        # )
+        run_mmseqs(
+            db_dir,
+            out_dir,
+            args.threads,
+            logdir,
+            gene_predictor,
+            args.evalue,
+            db_name="PHROG",
+        )
+        run_mmseqs(
+            db_dir,
+            out_dir,
+            args.threads,
+            logdir,
+            gene_predictor,
+            args.evalue,
+            db_name="CARD",
+        )
         run_mmseqs(
             db_dir,
             out_dir,