Merge pull request #324 from gbouras13/dev

v1.6.1
gbouras13 · Jan 17, 2024 · b1173c8 · b1173c8
2 parents 4ad7b91 + c285df5
commit b1173c8
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diff --git a/HISTORY.md b/HISTORY.md
@@ -1,6 +1,11 @@
 History
 =======
 
+1.6.1 (2024-01-17)
+------------------
+
+* Fixes a bug that was removing tRNAs from the `.tbl` output format #323.
+
 1.6.0 (2024-01-11)
 ------------------
 

diff --git a/bin/post_processing.py b/bin/post_processing.py
@@ -1165,7 +1165,7 @@ def create_tbl(
                 self.total_gff["Method"] == f"tRNAscan-SE_{self.trna_version}"
             ]
             # keep only trnas and pseudogenes
-            trna_df.contig = trna_df.start.astype(str)
+            trna_df.contig = trna_df.contig.astype(str)
             trna_df.start = trna_df.start.astype(int)
             trna_df.stop = trna_df.stop.astype(int)
             trna_df[["attributes", "locus_tag"]] = trna_df["attributes"].str.split(

diff --git a/bin/version.py b/bin/version.py
@@ -1 +1 @@
-__version__ = "1.6.0"
+__version__ = "1.6.1"
diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -1,5 +1,5 @@
 Pygments==2.15.0
 pymdown-extensions==10.0
-jinja2==3.0.3
+jinja2>=3.1.3
 Markdown==3.3.7
 
diff --git a/setup.py b/setup.py
@@ -19,7 +19,7 @@ def package_files(directory):
 
 setup(
     name="Pharokka",
-    version="1.6.0",
+    version="1.6.1",
     author="George Bouras",
     author_email="george.bouras@adelaide.edu.au",
     description="Fast phage annotation tool",