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EPA-PLS

General codes for running envirotype-to-phenotype associations (EPA) using partial least squares

Codes

EPA 1 (Partial Least Squares 1, univariate for genotypes): Modeling reaction norms here

EPA 2 (Partial Least Squares 2, multivariate for locations): Modeling location-by-location similarities using historial yield trial data here

Creating single-step matrices for genomic prediciton: combining past and future GxE data here

Identifying pivot locations in experimental networks using environmental weights here

Data

Example of Phenotypic, Genotypic and Envirotyping data could be downlaod here

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