General codes for running envirotype-to-phenotype associations (EPA) using partial least squares
EPA 1 (Partial Least Squares 1, univariate for genotypes): Modeling reaction norms here
EPA 2 (Partial Least Squares 2, multivariate for locations): Modeling location-by-location similarities using historial yield trial data here
Creating single-step matrices for genomic prediciton: combining past and future GxE data here
Identifying pivot locations in experimental networks using environmental weights here
Example of Phenotypic, Genotypic and Envirotyping data could be downlaod here