GitHub - gdavidson/MongoDB_RFAM_handler: JAVA program that imports data from the RFAM DB into your local mongoDB.

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JAVA program that imports data from the RFAM DB into your local mongoDB.

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
dist		dist
src/project		src/project
.gitattributes		.gitattributes
.gitignore		.gitignore
readme.txt		readme.txt

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Requires mongoDB installed and running.
Mongo DB:
- http://www.mongodb.org/
Rfam:
-http://rfam.sanger.ac.uk/

Run by using command "
java -jar "MongoDatabaseRfamHandler.jar" <args>" while in /dist folder.

Possible arguments:
-import <IDRFAM1>,<IDRFAM2>... : imports RNA families from a list of IDs separated by commas.
-get <ORGANISM> : displays the sequences and secondary structure of a given organism.
-search <REGEXP>: displays organisms that contains the given regular expression.