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make-initial-stoptags looks for ".ht" extension but load-graph produces ".pt" extension #381

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chuckpr opened this issue Apr 8, 2014 · 2 comments

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@chuckpr
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chuckpr commented Apr 8, 2014

make-stoptags.py is checking for graphbase + '.ht'

infiles = [graphbase + '.ht', graphbase + '.tagset']
    if args.stoptags:
        infiles.append(args.stoptags)
    for _ in infiles:
        check_file_status(_)

...but loading graphbase + 'pt' (and printing ".ht").

print 'loading htable %s.ht' % graphbase
    htable = khmer.load_hashbits(graphbase + '.pt')
@mr-c
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mr-c commented Apr 9, 2014

Great catch. This is a result of my purge of the word 'hash' from the user documentation. It should be 'pt', for counting hash.

@mr-c
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mr-c commented Apr 9, 2014

Heh, old habits. 'pt' for presence table.

@mr-c mr-c changed the title make-stoptags looks for ".ht" extension but load-graph produces ".pt" extension make-initial-stoptags looks for ".ht" extension but load-graph produces ".pt" extension Apr 19, 2014
@mr-c mr-c closed this as completed Apr 19, 2014
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