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Review annotations to GO:0048017 inositol lipid-mediated signaling #4645

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pgaudet opened this issue Jun 23, 2023 · 9 comments
Closed

Review annotations to GO:0048017 inositol lipid-mediated signaling #4645

pgaudet opened this issue Jun 23, 2023 · 9 comments
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annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms

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@pgaudet
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pgaudet commented Jun 23, 2023

GO:0048017 inositol lipid-mediated signaling

@pgaudet
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pgaudet commented Jun 26, 2023

GO:0048017 inositol lipid-mediated signaling - has 8 EXP:

https://docs.google.com/spreadsheets/d/1rVvaF6iE3mZPdiXz-23e-AASDT5D9NIdTA2JbHqDIqY/edit#gid=0

  • 1 UniProt - removed
  • 5 SGD
  • 1 MGI
  • 1 WB
    I am surprised we are getting different numbers...

@pgaudet
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pgaudet commented Jun 26, 2023

for GO:0048015 phosphatidylinositol-mediated signaling , see #4639

@LiNiMGI
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LiNiMGI commented Jun 26, 2023

MGI done.

@LiNiMGI LiNiMGI removed their assignment Jun 26, 2023
@srengel
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srengel commented Jun 26, 2023

SGD done.

@pgaudet
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pgaudet commented Jul 3, 2023

@vanaukenk There is one WB annotation left to review; can you please check? I dont see a lot of molecular evidence to annotations a precise role in a signaling pathway.

@pgaudet
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pgaudet commented Jul 4, 2023

@sarach06 @blazaropinto

IPR016555 >> PLD is involved in many signaling pathways, see Fig 3 in PMID:29478139

I suggest you move the annotation to the parent GO:0035556 intracellular signal transduction.

Thanks, Pascale

@blazaropinto
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Thank you for letting us know Pascale. I updated the term in this entry. The changes will be available in the next InterPro release.

Best,
Beatriz

@vanaukenk
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WB is done.

@vanaukenk vanaukenk removed their assignment Jul 6, 2023
@pgaudet
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pgaudet commented Jul 7, 2023

Thanks everyone!

@pgaudet pgaudet closed this as completed Jul 7, 2023
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Labels
annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms
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