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Review annotations to GO:0046538 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity and GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity #5503

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pgaudet opened this issue Nov 5, 2024 · 3 comments
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annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms

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@pgaudet
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pgaudet commented Nov 5, 2024

Dear all,

The proposal has been made to obsolete GO:0046538 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity and
GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity

and replace by parent phosphoglycerate mutase activity

Group  Number of annotations
EcoCyc 3 DONE
GeneDB 2
PomBase 1 DONE
RGD 1
TAIR 2
UniProt 8
WB 2

Mappings

  • HAMAP:MF_01038 > GO:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity ; GO:0046537
  • HAMAP:MF_01039 > GO:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity ; GO:0046538
  • HAMAP:MF_01402 > GO:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity ; GO:0046537
  • InterPro:IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase > GO:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity ; GO:0046537
  • InterPro:IPR023665 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, prokaryotes > GO:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity ; GO:0046537
  • UniRule:UR000009933 > GO:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity ; GO:0046537
  • UniRule:UR000100531 > GO:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity ; GO:0046537
  • UniRule:UR000100537 > GO:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity ; GO:0046538
@amandamackie
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EcoCyc done

@sarach06
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Hi,
Thank you very much for this. I have replaced the term in IPR004456 with the parent term and removed it from its children IPR023665 ( we don't have to add it in both as it will be transferred from the parent InterPro entry). These changes will be available in InterPro 103.0.
Best regards,
Sara

@pgaudet
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pgaudet commented Nov 15, 2024

Terms have been obsoleted. Errors will appear in reports.

@pgaudet pgaudet closed this as completed Nov 15, 2024
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annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms
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