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Merge pull request #27234 from geneontology/update-design-patterns
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Update design pattern docs
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@balhoff
balhoff authored Mar 9, 2024
2 parents 2ed1355 + e546d64 commit c11785e
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2 changes: 1 addition & 1 deletion docs/patterns/protein_complex_by_activity.md
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## Equivalent to

[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)



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5 changes: 2 additions & 3 deletions src/design_patterns/anatomical_structure_development.tsv
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Expand Up @@ -205,7 +205,6 @@ http://purl.obolibrary.org/obo/GO_0021752 inferior salivary nucleus development
http://purl.obolibrary.org/obo/GO_0048839 inner ear development http://purl.obolibrary.org/obo/UBERON_0001846 internal ear
http://purl.obolibrary.org/obo/GO_0072061 inner medullary collecting duct development http://purl.obolibrary.org/obo/UBERON_0004205 inner medullary collecting duct
http://purl.obolibrary.org/obo/GO_0072057 inner stripe development http://purl.obolibrary.org/obo/UBERON_0004201 kidney outer medulla inner stripe
http://purl.obolibrary.org/obo/GO_0160095 insect pharynx development http://purl.obolibrary.org/obo/UBERON_60005380 insect pharynx
http://purl.obolibrary.org/obo/GO_0001748 insect visual primordium development http://purl.obolibrary.org/obo/UBERON_6001059 insect visual primordium
http://purl.obolibrary.org/obo/GO_0021727 intermediate reticular formation development http://purl.obolibrary.org/obo/UBERON_0009776 intermediate reticular formation
http://purl.obolibrary.org/obo/GO_0060576 intestinal epithelial cell development http://purl.obolibrary.org/obo/CL_0002563 intestinal epithelial cell
Expand Down Expand Up @@ -476,15 +475,15 @@ http://purl.obolibrary.org/obo/GO_0003163 sinoatrial node development http://pur
http://purl.obolibrary.org/obo/GO_0003172 sinoatrial valve development http://purl.obolibrary.org/obo/UBERON_0002086 sinoatrial valve
http://purl.obolibrary.org/obo/GO_0003235 sinus venosus development http://purl.obolibrary.org/obo/UBERON_0002063 sinus venosus
http://purl.obolibrary.org/obo/GO_0048741 skeletal muscle fiber development http://purl.obolibrary.org/obo/CL_0008002 skeletal muscle fiber
http://purl.obolibrary.org/obo/GO_0060538 skeletal muscle organ development http://purl.obolibrary.org/obo/UBERON_0014892 skeletal muscle organ
http://purl.obolibrary.org/obo/GO_0060538 skeletal muscle organ development http://purl.obolibrary.org/obo/UBERON_0014892 skeletal muscle organ, vertebrate
http://purl.obolibrary.org/obo/GO_0007519 skeletal muscle tissue development http://purl.obolibrary.org/obo/UBERON_0001134 skeletal muscle tissue
http://purl.obolibrary.org/obo/GO_0001501 skeletal system development http://purl.obolibrary.org/obo/UBERON_0001434 skeletal system
http://purl.obolibrary.org/obo/GO_0043588 skin development http://purl.obolibrary.org/obo/UBERON_0002097 skin of body
http://purl.obolibrary.org/obo/GO_0098773 skin epidermis development http://purl.obolibrary.org/obo/UBERON_0001003 skin epidermis
http://purl.obolibrary.org/obo/GO_0048745 smooth muscle tissue development http://purl.obolibrary.org/obo/UBERON_0001135 smooth muscle tissue
http://purl.obolibrary.org/obo/GO_0060023 soft palate development http://purl.obolibrary.org/obo/UBERON_0001733 soft palate
http://purl.obolibrary.org/obo/GO_0021746 solitary nucleus development http://purl.obolibrary.org/obo/UBERON_0009050 nucleus of solitary tract
http://purl.obolibrary.org/obo/GO_0007525 somatic muscle development http://purl.obolibrary.org/obo/UBERON_0014895 somatic muscle
http://purl.obolibrary.org/obo/GO_0007525 somatic muscle development http://purl.obolibrary.org/obo/UBERON_0014895 somatic muscle, invertebrate
http://purl.obolibrary.org/obo/GO_0061053 somite development http://purl.obolibrary.org/obo/UBERON_0002329 somite
http://purl.obolibrary.org/obo/GO_0002075 somitomeric trunk muscle development http://purl.obolibrary.org/obo/UBERON_0004138 somitomeric trunk muscle
http://purl.obolibrary.org/obo/GO_0021510 spinal cord development http://purl.obolibrary.org/obo/UBERON_0002240 spinal cord
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6 changes: 3 additions & 3 deletions src/design_patterns/cell_differentiation_by_mature_cell_type.tsv
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Expand Up @@ -60,7 +60,7 @@ http://purl.obolibrary.org/obo/GO_0003167 atrioventricular bundle cell different
http://purl.obolibrary.org/obo/GO_0060922 atrioventricular node cell differentiation http://purl.obolibrary.org/obo/CL_1000410 myocyte of atrioventricular node
http://purl.obolibrary.org/obo/GO_0030221 basophil differentiation http://purl.obolibrary.org/obo/CL_0000767 basophil
http://purl.obolibrary.org/obo/GO_0060837 blood vessel endothelial cell differentiation http://purl.obolibrary.org/obo/CL_0000071 blood vessel endothelial cell
http://purl.obolibrary.org/obo/GO_0050873 brown fat cell differentiation http://purl.obolibrary.org/obo/CL_0000449 brown fat cell
http://purl.obolibrary.org/obo/GO_0050873 brown fat cell differentiation http://purl.obolibrary.org/obo/CL_0000449 brown adipocyte
http://purl.obolibrary.org/obo/GO_0060219 camera-type eye photoreceptor cell differentiation http://purl.obolibrary.org/obo/CL_0010009 camera-type eye photoreceptor cell
http://purl.obolibrary.org/obo/GO_0060946 cardiac blood vessel endothelial cell differentiation http://purl.obolibrary.org/obo/CL_0010006 cardiac blood vessel endothelial cell
http://purl.obolibrary.org/obo/GO_0003348 cardiac endothelial cell differentiation http://purl.obolibrary.org/obo/CL_0010008 cardiac endothelial cell
Expand Down Expand Up @@ -113,7 +113,7 @@ http://purl.obolibrary.org/obo/GO_0048773 erythrophore differentiation http://pu
http://purl.obolibrary.org/obo/GO_0021755 eurydendroid cell differentiation http://purl.obolibrary.org/obo/CL_0000253 eurydendroid cell
http://purl.obolibrary.org/obo/GO_0160083 exhausted T cell differentiation http://purl.obolibrary.org/obo/CL_0011025 exhausted T cell
http://purl.obolibrary.org/obo/GO_0001754 eye photoreceptor cell differentiation http://purl.obolibrary.org/obo/CL_0000287 eye photoreceptor cell
http://purl.obolibrary.org/obo/GO_0045444 fat cell differentiation http://purl.obolibrary.org/obo/CL_0000136 fat cell
http://purl.obolibrary.org/obo/GO_0045444 fat cell differentiation http://purl.obolibrary.org/obo/CL_0000136 adipocyte
http://purl.obolibrary.org/obo/GO_0090077 foam cell differentiation http://purl.obolibrary.org/obo/CL_0000891 foam cell
http://purl.obolibrary.org/obo/GO_0002316 follicular B cell differentiation http://purl.obolibrary.org/obo/CL_0000843 follicular B cell
http://purl.obolibrary.org/obo/GO_0002268 follicular dendritic cell differentiation http://purl.obolibrary.org/obo/CL_0000442 follicular dendritic cell
Expand Down Expand Up @@ -293,5 +293,5 @@ http://purl.obolibrary.org/obo/GO_0072193 ureter smooth muscle cell differentiat
http://purl.obolibrary.org/obo/GO_0035886 vascular associated smooth muscle cell differentiation http://purl.obolibrary.org/obo/CL_0000359 vascular associated smooth muscle cell
http://purl.obolibrary.org/obo/GO_0060843 venous endothelial cell differentiation http://purl.obolibrary.org/obo/CL_0002543 vein endothelial cell
http://purl.obolibrary.org/obo/GO_0060114 vestibular receptor cell differentiation http://purl.obolibrary.org/obo/CL_0000609 vestibular hair cell
http://purl.obolibrary.org/obo/GO_0050872 white fat cell differentiation http://purl.obolibrary.org/obo/CL_0000448 white fat cell
http://purl.obolibrary.org/obo/GO_0050872 white fat cell differentiation http://purl.obolibrary.org/obo/CL_0000448 white adipocyte
http://purl.obolibrary.org/obo/GO_0050936 xanthophore differentiation http://purl.obolibrary.org/obo/CL_0000430 xanthophore cell
2 changes: 1 addition & 1 deletion src/design_patterns/occursIn.tsv
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Expand Up @@ -87,7 +87,7 @@ http://purl.obolibrary.org/obo/GO_1900116 extracellular negative regulation of s
http://purl.obolibrary.org/obo/GO_1900115 extracellular regulation of signal transduction http://purl.obolibrary.org/obo/GO_0005576 extracellular region http://purl.obolibrary.org/obo/GO_0009966 regulation of signal transduction
http://purl.obolibrary.org/obo/GO_0097579 extracellular sequestering of copper ion http://purl.obolibrary.org/obo/GO_0005576 extracellular region http://purl.obolibrary.org/obo/GO_0097578 sequestering of copper ion
http://purl.obolibrary.org/obo/GO_0006858 extracellular transport http://purl.obolibrary.org/obo/GO_0005576 extracellular region http://purl.obolibrary.org/obo/GO_0006810 transport
http://purl.obolibrary.org/obo/GO_1904606 fat cell apoptotic process http://purl.obolibrary.org/obo/CL_0000136 fat cell http://purl.obolibrary.org/obo/GO_0006915 apoptotic process
http://purl.obolibrary.org/obo/GO_1904606 fat cell apoptotic process http://purl.obolibrary.org/obo/CL_0000136 adipocyte http://purl.obolibrary.org/obo/GO_0006915 apoptotic process
http://purl.obolibrary.org/obo/GO_0044346 fibroblast apoptotic process http://purl.obolibrary.org/obo/CL_0000057 fibroblast http://purl.obolibrary.org/obo/GO_0006915 apoptotic process
http://purl.obolibrary.org/obo/GO_0010451 floral meristem growth http://purl.obolibrary.org/obo/PO_0000229 flower meristem http://purl.obolibrary.org/obo/GO_0048589 developmental growth
http://purl.obolibrary.org/obo/GO_0032529 follicle cell microvillus organization http://purl.obolibrary.org/obo/CL_0000477 follicle cell of egg chamber http://purl.obolibrary.org/obo/GO_0032528 microvillus organization
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3 changes: 0 additions & 3 deletions src/ontology/imports/go-pattern-conformance.ttl
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Expand Up @@ -39656,9 +39656,6 @@
<http://purl.obolibrary.org/obo/GO_0160094> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/anatomical_structure_development.yaml> .


<http://purl.obolibrary.org/obo/GO_0160095> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/anatomical_structure_development.yaml> .


<http://purl.obolibrary.org/obo/GO_0160145> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .


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