Obsoletion notice: SMAD protein phosphorylation

[pgaudet]

Dear all,

For the work on signaling cassettes, we propose to obsolete the following terms:

• GO:0007182 common-partner SMAD protein phosphorylation - 7 EXP
• GO:0060389 pathway-restricted SMAD protein phosphorylation - 43 EXP
• GO:0060393 regulation of pathway-restricted SMAD protein phosphorylation - 4 EXP
• GO:0060394 negative regulation of pathway-restricted SMAD protein phosphorylation - 20 EXP
• GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation - 66 EXP

Annotations are here: geneontology/go-annotation#4612

assigned_by | Number of annotations

ARUK-UCL | 2
BHF-UCL | 81 + 2 extensions
FlyBase | 3
MGI | 4
RGD | 2
UniProt | 26
Xenbase | 1
ZFIN | 15

There are no mappings; these terms are not present in any subsets.

The reason for obsoletion is that these represent readouts for the following terms:

• GO:0060395 SMAD protein signal transduction
• GO:0060390 regulation of SMAD protein signal transduction
• GO:0060392 negative regulation of SMAD protein signal transduction
• GO:0060391 positive regulation of SMAD protein signal transduction
• GO:0007179 transforming growth factor beta receptor signaling pathway or regulation
• GO:0032924 activin receptor signaling pathway or regulation
• GO:0030509 BMP signaling pathway or regulation

Thanks, Pascale

@gantonazzo @hattrill @RLovering

[pgaudet]

• GO:0007182 common-partner SMAD protein phosphorylation >> consider: protein kinase activity, SMAD protein signal transduction, positive regulation of SMAD protein signal transduction
• GO:0060389 pathway-restricted SMAD protein phosphorylation >> consider: protein kinase activity, SMAD protein signal transduction, positive regulation of SMAD protein signal transduction
• GO:0060393 regulation of pathway-restricted SMAD protein phosphorylation >> consider: protein kinase regulator activity, regulation of SMAD protein signal transduction
• GO:0060394 negative regulation of pathway-restricted SMAD protein phosphorylation >> consider: protein kinase inhibitor activity, negative regulation of SMAD protein signal transduction
• GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation >> consider: protein kinase activator activity, positive regulation of SMAD protein signal transduction