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Create gorule-0000065.md
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pgaudet authored Dec 11, 2024
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---
layout: rule
id: GORULE:0000065
title: "Annotations to term that are candidates for obsoletion should be removed"
type: report
fail_mode: soft
status: implemented
contact: "go-quality@lists.stanford.edu"
implementations:
- language: python
source: https://github.com/biolink/ontobio/blob/master/ontobio/io/qc.py
examples:
fail:
- comment: fails because GO:0007190 is in the subset gocheck_obsoletion_candidate
format: gaf
input: "UniProtKB P04049 RAF1 involved_in GO:0007190 PMID:15385642 IDA P protein taxon:9606 20171206 BHF-UCL"
pass:
- comment: Should pass
format: gaf
input: "UniProtKB A0A0H3GM48 dacA enables GO:0004016 PMID:23716572 IDA F protein taxon:393133 20160304 UniProt"

---
Terms scheduled for obsoletion are identified by the subset gocheck_obsoletion_candidate.
New annotations should not be made to these terms, and existing annotations should be removed or replaced.

Error report: <group>.report.md

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