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PAINT should load and consider the IKR annotations coming from primary annotations #54

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pgaudet opened this issue Jun 3, 2019 · 2 comments
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@pgaudet
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pgaudet commented Jun 3, 2019

Hello,

geneontology/go-annotation#2378

There is a problem with primary annotations with evidence code IKR (+NOT): we should NOT propagate IBA (positive annotations) for leaves that have NOT annotations.

Behavior should be the same as when there is a NOT IDA.

I think the task is to load IKR in PAINT, and all NOTs should be treated the same way.

@dustine32 @mugitty

@hattrill
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hattrill commented Nov 1, 2019

Can we address the NOT issue? A NOT should block propagation regardless of evidence code.

@mugitty
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mugitty commented Nov 5, 2019

There are a number of issues here:

  • PAINT client now supports experimental IKR to leaf

  • What is the expected behavior, if leaf has annotation with qualifier that is not same as IBA? All types of qualifiers have to be handled

@pgaudet, can you discuss during next annotation meeting.

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