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The section Import Data in ODM has been updated #60

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34 changes: 20 additions & 14 deletions docs/release-notes/v1.50-v1.59.md
Original file line number Diff line number Diff line change
Expand Up @@ -526,6 +526,7 @@ Please review the documentation, as these changes may impact your integrations.
1. **Tabular Data Endpoint Changes**

* ??? abstract "Introduced changes to Tabular Data"

| Introduced change | Changes Description |
|:----------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| Deprecating old response format | The old response format for tabular data will be deprecated. The **"multi_value"** response format (introduced in July 2023) will be the default option. It allows retrieval of data with one or more features and suits any type of tabular data, including **.gct** files. |
Expand All @@ -534,35 +535,39 @@ Please review the documentation, as these changes may impact your integrations.
* ??? example "Response example"
![RN](1.58/1-58-2.png)

* ??? danger "Affected endpoints (for both as-curator and as-users)"
| Endpoint Group | Endpoints Affected |
|:---------------------|:----------------------------------------------------------------------------------------------------------------------------------------|
| expressionUser | GET `/api/v1/as-user/expressions` GET `/api/v1/as-user/expressions/{id}` |
| expressionCurator | GET `/api/v1/as-curator/expressions` GET `/api/v1/as-curator/expressions/{id}` |
| integrationUser | GET `/api/v1/as-user/omics/expression/data` |
| integrationCurator | GET `/api/v1/as-curator/omics/expression/data` |
* ??? danger "Affected endpoints (for both as-curator and as-users)"

| Endpoint Group | Endpoints Affected |
|:---------------------|:----------------------------------------------------------------------------------------------------------------------------------------|
| expressionUser | GET `/api/v1/as-user/expressions` GET `/api/v1/as-user/expressions/{id}` |
| expressionCurator | GET `/api/v1/as-curator/expressions` GET `/api/v1/as-curator/expressions/{id}` |
| integrationUser | GET `/api/v1/as-user/omics/expression/data` |
| integrationCurator | GET `/api/v1/as-curator/omics/expression/data` |

2. **Variants Endpoint Changes**

* ??? abstract "Introduced changes to Variants"

| Introduced change | Changes Description |
|:----------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| Introducing **“variant”** section | A new section **“variant”** contains all fields related to a specific variation from the original VCF file: CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO. |

* ??? example "Response example"
![RN](1.58/1-58-3.png)

* ??? danger "Affected endpoints (for both as-curator and as-users)"
| Endpoint Group | Endpoints Affected |
|:---------------------|:----------------------------------------------------------------------------------------------------------------------------------------|
| variantUser | GET `/api/v1/as-user/variants` GET `/api/v1/as-user/variants/{id}` |
| variantCurator | GET `/api/v1/as-curator/variants` GET `/api/v1/as-curator/variants/{id}` |
| integrationUser | GET `/api/v1/as-user/omics/variant/data` |
| integrationCurator | GET `/api/v1/as-curator/omics/variant/data`|
* ??? danger "Affected endpoints (for both as-curator and as-users)"

| Endpoint Group | Endpoints Affected |
|:---------------------|:----------------------------------------------------------------------------------------------------------------------------------------|
| variantUser | GET `/api/v1/as-user/variants` GET `/api/v1/as-user/variants/{id}` |
| variantCurator | GET `/api/v1/as-curator/variants` GET `/api/v1/as-curator/variants/{id}` |
| integrationUser | GET `/api/v1/as-user/omics/variant/data` |
| integrationCurator | GET `/api/v1/as-curator/omics/variant/data`|

3. **Flow Cytometry Endpoint Changes**

* ??? abstract "Introduced changes to Flow Cytometry"

| Introduced change | Changes Description |
|:----------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| Introducing **“feature”** and **“value”** sections | Flow-cytometry data response now has section **“feature”** including **"readoutType"**, **"cellPopulation"** and **"marker"** fields. **“Value”** section contains the expression field which is renamed to **“value”**.|
Expand All @@ -572,6 +577,7 @@ Please review the documentation, as these changes may impact your integrations.
![RN](1.58/1-58-4.png)

* ??? danger "Affected endpoints (for both as-curator and as-users)"

| Endpoint Group | Endpoints Affected |
|:---------------------|:----------------------------------------------------------------------------------------------------------------------------------------|
| flowCytometryUser | GET `/api/v1/as-user/flow-cytometries` GET `/api/v1/as-user/flow-cytometries/{id}` |
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