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New version with CRAM-enabled genome/bam-readcount master #9

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New version with CRAM-enabled genome/bam-readcount master #9

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Commits on Aug 16, 2018

  1. First working commit

    @johnegarza
    johnegarza committed Aug 16, 2018
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Commits on Sep 21, 2018

  1. pulled updated script from docker-cle

    @johnegarza
    johnegarza committed Sep 21, 2018
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Commits on May 17, 2019

  1. pyvcf2 wheel is broken, now manually building it

    @johnegarza
    johnegarza committed May 17, 2019
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  2. Merge pull request genome#1 from genome/cyvcf2_fix 

    pyvcf2 wheel is broken, now manually building it
    @johnegarza
    johnegarza authored May 17, 2019
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Commits on Jun 23, 2019

  1. Add prefix to output name

    @dufeiyu
    dufeiyu committed Jun 23, 2019
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Commits on Jun 26, 2019

  1. Add variable prefixed_sample

    @dufeiyu
    dufeiyu committed Jun 26, 2019
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Commits on Jun 27, 2019

  1. Merge pull request genome#3 from dufeiyu/add_prefix 

    Add prefix to output name
    @dufeiyu
    dufeiyu authored Jun 27, 2019
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Commits on Aug 20, 2019

  1. Consider variant alleles instead of genotype alleles when creating th… 

    …e region files
    @susannasiebert
    susannasiebert committed Aug 20, 2019
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Commits on Aug 21, 2019

  1. Merge pull request genome#4 from susannasiebert/1.1.1 

    Consider variant alleles instead of genotype alleles when creating the region files
    @susannasiebert
    susannasiebert authored Aug 21, 2019
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Commits on Aug 4, 2020

  1. Add two stage build for samtools-1.10 fork tag cram-v0.0.1

    abbcdfinv committed Aug 4, 2020
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  2. Remove image hash as tag. Fixes

    @apldx
    apldx committed Aug 4, 2020
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  3. Add comments about xenial/bionic bam-readcount build

    @apldx
    apldx committed Aug 4, 2020
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  4. Switch to focal, Python 3, and wheel build of cyvcf2

    @apldx
    apldx committed Aug 4, 2020
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  5. Set default Python to Python3

    @apldx
    apldx committed Aug 4, 2020
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Commits on May 31, 2021

  1. Bump bam-readcount version

    @apldx
    apldx committed May 31, 2021
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  2. Merge branch '1.1.1-samtools-1.10' of ghseqfu:seqfu/docker-bam_readco… 

    …unt_helper-cwl into 1.1.1-samtools-1.10
    @apldx
    apldx committed May 31, 2021
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Commits on Jul 8, 2021

  1. Update with merged genome/bam-readcount

    @apldx
    apldx committed Jul 8, 2021
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  2. Update

    @apldx
    apldx committed Jul 8, 2021
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  3. Remove Makefile

    @apldx
    apldx committed Jul 8, 2021
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