blobtk validate

Command line

[experimental] Validate BlobToolKit and GenomeHubs files. Called as `blobtk validate`

Usage: blobtk validate [OPTIONS]

Options:
  -t, --taxdump <TAXDUMP>
          Path to backbone taxonomy file/directory
  -f, --taxonomy-format <TAXONOMY_FORMAT>
          Format of taxonomy file [possible values: ncbi, gbif, ena, ott, genome-hubs]
  -n, --name-classes <NAME_CLASSES>
          List of name_classes to use during taxon lookup [default: "scientific name"]
  -g, --genomehubs_files <GENOMEHUBS_FILES>
          Files to match to taxIDs - Experimental
  -S, --schema <SCHEMA>
          Path to output JSON Schema file
  -d, --dry-run
          
  -k, --skip-tsv
          
  -h, --help
          Print help (see more with '--help')