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Issues list

Include other names when parsing ENA taxonomy extra
#109 opened Jan 13, 2025 by rjchallis
Add species_name_type attribute
#108 opened Jan 10, 2025 by rjchallis
Remove organelle entries from assembly index
#107 opened Jan 10, 2025 by rjchallis
Import full chromosome counts from CCDB data About data, not code priority:medium Medium priority, requires attention at some point process:curation Data curation, including data cleaning and validation process:import Data import workflows process:integration Integration with other resources project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:enhancement Enhancement requests, suggestions for new features or modifications to existing features stack:data Related to the raw or processed data in a GenomeHubs instance
#105 opened Jan 8, 2025 by ccaio
3 tasks
@ccaio
GoaT no longer reporting results for certain taxon IDs priority:high High priority, requires attention soon process:import Data import workflows project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:bug Bug reports, unexpected or incorrect behaviour stack:data Related to the raw or processed data in a GenomeHubs instance
#103 opened Dec 3, 2024 by andrew-varley
@rjchallis
1
include other names in ENA taxonomy extra priority:high High priority, requires attention soon process:import Data import workflows project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:enhancement Enhancement requests, suggestions for new features or modifications to existing features stack:data Related to the raw or processed data in a GenomeHubs instance stack:genomehubs Related to the core GenomeHubs codebase
#101 opened Nov 26, 2024 by rjchallis
@rjchallis
Convert taxonomy fetch and init to mini pipeline priority:high High priority, requires attention soon process:import Data import workflows project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:enhancement Enhancement requests, suggestions for new features or modifications to existing features stack:data Related to the raw or processed data in a GenomeHubs instance
#100 opened Nov 20, 2024 by rjchallis
Convert assembly parsing to mini pipeline priority:high High priority, requires attention soon process:import Data import workflows project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:enhancement Enhancement requests, suggestions for new features or modifications to existing features stack:data Related to the raw or processed data in a GenomeHubs instance
#99 opened Nov 20, 2024 by rjchallis
@rjchallis
3
Refactor goat-data import workflow priority:high High priority, requires attention soon process:import Data import workflows project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:epic High level overview of tasks that are too large to be captured by a single issue stack:data Related to the raw or processed data in a GenomeHubs instance
#98 opened Nov 20, 2024 by rjchallis
6 tasks
@rjchallis
Arnica montana ploidy data About data, not code priority:medium Medium priority, requires attention at some point process:curation Data curation, including data cleaning and validation project:goat 🐐 Related to Genomes on a Tree (GOAT) reason:enhancement Enhancement requests, suggestions for new features or modifications to existing features stack:data Related to the raw or processed data in a GenomeHubs instance
#97 opened Nov 18, 2024 by ccaio
1 of 3 tasks
@ccaio
1
Repeat content display
#106 opened Oct 30, 2024 by kerstinhowe
@ccaio
1
Make variable display names prettier
#25 opened Nov 4, 2022 by Euphrasiologist
@ccaio
Add all relevant summary types to variables
#24 opened Nov 4, 2022 by Euphrasiologist
Fill missing levels in variables for goat-cli
#4 opened May 4, 2022 by Euphrasiologist
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