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serde features update
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@ChristianBeilschmidt
ChristianBeilschmidt committed Sep 12, 2024
1 parent 52322f0 commit ca2d2a6
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Showing 4 changed files with 180 additions and 66 deletions.
4 changes: 4 additions & 0 deletions Cargo.lock
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1 change: 1 addition & 0 deletions datatypes/Cargo.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@ pro = []
arrow = { version = "53.0", features = ["ipc_compression"] }
arrow-array = "53.0"
arrow-ord = "53.0"
arrow-schema = { version = "53", features = ["serde"] }
bytes = "1.5" # for postgres-types impls
chrono = "0.4"
fallible-iterator = "0.2" # only for postgres-protocol
Expand Down
109 changes: 100 additions & 9 deletions datatypes/src/collections/feature_collection.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -1515,7 +1515,6 @@ mod struct_serde {
use serde::de::{SeqAccess, Visitor};
use serde::ser::Error;
use serde::{Deserializer, Serializer};

use std::fmt::Formatter;
use std::io::Cursor;

Expand Down Expand Up @@ -1599,6 +1598,97 @@ mod struct_serde {
self.visit_byte_buf(bytes)
}
}

#[cfg(test)]
pub fn serialize_json<S>(struct_array: &StructArray, serializer: S) -> Result<S::Ok, S::Error>
where
S: Serializer,
{
use serde::ser::SerializeStruct;

let batch = RecordBatch::from(struct_array);

let mut json_writer = arrow::json::ArrayWriter::new(Vec::<u8>::new());
json_writer.write(&batch).map_err(S::Error::custom)?;
json_writer.finish().map_err(S::Error::custom)?;
let json: serde_json::Value =
serde_json::from_slice(&json_writer.into_inner()).map_err(S::Error::custom)?;

let mut struct_serializer = serializer.serialize_struct("FeatureCollection", 2)?;
struct_serializer.serialize_field("schema", batch.schema_ref())?;
struct_serializer.serialize_field("data", &json)?;
struct_serializer.end()
}

#[cfg(test)]
pub fn deserialize_json<'de, D>(deserializer: D) -> Result<StructArray, D::Error>
where
D: Deserializer<'de>,
{
use std::io::BufReader;

struct StructArrayJsonDeserializer;

impl<'de> Visitor<'de> for StructArrayJsonDeserializer {
type Value = StructArray;

fn expecting(&self, formatter: &mut Formatter) -> std::fmt::Result {
formatter.write_str("an Arrow StructArray")
}

fn visit_map<A>(self, mut map: A) -> Result<Self::Value, A::Error>
where
A: serde::de::MapAccess<'de>,
{
use serde::de::Error;

let (mut schema, mut data) = (None, None);

while let Some(key) = map.next_key()? {
match key {
"schema" => {
schema = Some(map.next_value::<arrow_schema::Schema>()?);
}
"data" => {
let value = map.next_value::<serde_json::Value>()?;
data = Some(serde_json::to_vec(&value).map_err(A::Error::custom)?);
}
other => return Err(A::Error::custom(format!("Unexpected field {other}"))),
}
}

let (Some(schema), Some(data)) = (schema, data) else {
return Err(A::Error::custom("Missing fields `schema` & `data`"));
};

let mut reader = arrow::json::ReaderBuilder::new(Arc::new(schema))
.build(BufReader::new(Cursor::new(&data)))
.map_err(A::Error::custom)?;

let batch = reader
.next()
.ok_or_else(|| {
A::Error::custom(
"Must be one batch inside the serialized data. Found none.",
)
})?
.map_err(A::Error::custom)?;
if reader.next().is_some() {
return Err(A::Error::custom(
"Must be one batch inside the serialized data. Found more.",
));
}

Ok(batch.into())
}
}

deserializer.deserialize_struct(
"FeatureCollection",
&["schema", "data"],
StructArrayJsonDeserializer,
)
}
}

impl<P, G> Reproject<P> for FeatureCollection<G>
Expand Down Expand Up @@ -1766,10 +1856,9 @@ mod tests {
.is_err());
}

/// If this test fails, change serialization to JSON (cf. methods below) instead of IPC.
#[test]
fn it_does_not_json_serialize() {
use arrow::record_batch::RecordBatch;

let collection = FeatureCollection::<MultiPoint>::from_data(
vec![(0.0, 0.1).into()],
vec![TimeInterval::new(0, 1).unwrap(); 1],
Expand All @@ -1786,11 +1875,13 @@ mod tests {

let struct_array = collection.table;

// TODO: if this stops failing, change the strange custom byte serialization to use JSON
let json = Vec::new();
let mut json_writer = arrow::json::ArrayWriter::new(json);
json_writer
.write(&RecordBatch::from(struct_array))
.unwrap_err();
let serialized_struct_array =
struct_serde::serialize_json(&struct_array, serde_json::value::Serializer)
.unwrap()
.to_string();

let mut deserializer = serde_json::Deserializer::from_str(&serialized_struct_array);

assert!(struct_serde::deserialize_json(&mut deserializer).is_err());
}
}
132 changes: 75 additions & 57 deletions operators/src/mock/mock_feature_collection_source.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -251,6 +251,7 @@ mod tests {
use geoengine_datatypes::{collections::MultiPointCollection, primitives::SpatialResolution};

#[test]
#[allow(clippy::too_many_lines)]
fn serde() {
let cache_hint = CacheHint::default();
let collection = MultiPointCollection::from_data(
Expand All @@ -272,64 +273,81 @@ mod tests {
let serialized = serde_json::to_value(&source).unwrap();

let collection_bytes = [
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255, 255, 16, 0, 0, 0, 24, 0, 0, 0, 0, 0, 1, 2, 20, 0, 0, 0, 172, 255, 255, 255, 64, 0,
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255, 255, 24, 0, 0, 0, 12, 0, 0, 0, 0, 0, 0, 16, 76, 0, 0, 0, 1, 0, 0, 0, 12, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 255, 255, 255, 255, 0, 0, 0, 0, 16, 0, 0, 0, 12, 0, 20, 0, 18, 0, 12, 0,
8, 0, 4, 0, 12, 0, 0, 0, 152, 1, 0, 0, 176, 1, 0, 0, 16, 0, 0, 0, 0, 0, 4, 0, 8, 0, 8,
0, 0, 0, 4, 0, 8, 0, 0, 0, 4, 0, 0, 0, 3, 0, 0, 0, 180, 0, 0, 0, 56, 0, 0, 0, 4, 0, 0,
0, 52, 255, 255, 255, 16, 0, 0, 0, 24, 0, 0, 0, 0, 0, 1, 2, 20, 0, 0, 0, 172, 255, 255,
255, 64, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 6, 0, 0, 0, 102, 111, 111, 98, 97, 114, 0, 0,
152, 255, 255, 255, 24, 0, 0, 0, 12, 0, 0, 0, 0, 0, 0, 16, 76, 0, 0, 0, 1, 0, 0, 0, 12,
0, 0, 0, 82, 255, 255, 255, 2, 0, 0, 0, 136, 255, 255, 255, 24, 0, 0, 0, 32, 0, 0, 0,
0, 0, 1, 2, 28, 0, 0, 0, 8, 0, 12, 0, 4, 0, 11, 0, 8, 0, 0, 0, 64, 0, 0, 0, 0, 0, 0, 1,
0, 0, 0, 0, 4, 0, 0, 0, 105, 116, 101, 109, 0, 0, 0, 0, 6, 0, 0, 0, 95, 95, 116, 105,
109, 101, 0, 0, 16, 0, 20, 0, 16, 0, 0, 0, 15, 0, 4, 0, 0, 0, 8, 0, 16, 0, 0, 0, 28, 0,
0, 0, 12, 0, 0, 0, 0, 0, 0, 12, 160, 0, 0, 0, 1, 0, 0, 0, 28, 0, 0, 0, 4, 0, 4, 0, 4,
0, 0, 0, 16, 0, 20, 0, 16, 0, 14, 0, 15, 0, 4, 0, 0, 0, 8, 0, 16, 0, 0, 0, 32, 0, 0, 0,
12, 0, 0, 0, 0, 0, 1, 16, 96, 0, 0, 0, 1, 0, 0, 0, 36, 0, 0, 0, 0, 0, 6, 0, 8, 0, 4, 0,
6, 0, 0, 0, 2, 0, 0, 0, 16, 0, 22, 0, 16, 0, 14, 0, 15, 0, 4, 0, 0, 0, 8, 0, 16, 0, 0,
0, 24, 0, 0, 0, 28, 0, 0, 0, 0, 0, 1, 3, 24, 0, 0, 0, 0, 0, 6, 0, 8, 0, 6, 0, 6, 0, 0,
0, 0, 0, 2, 0, 0, 0, 0, 0, 4, 0, 0, 0, 105, 116, 101, 109, 0, 0, 0, 0, 4, 0, 0, 0, 105,
116, 101, 109, 0, 0, 0, 0, 10, 0, 0, 0, 95, 95, 103, 101, 111, 109, 101, 116, 114, 121,
0, 0, 1, 0, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 128, 1, 0, 0, 0, 0, 0, 0, 128, 2, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 204, 1, 0, 0, 65, 82, 82, 79, 87, 49,
]
.to_vec();
assert_eq!(
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