Add HEMCO-standalone dry-run data download scripts

CHANGELOG.md

@@ -7,14 +7,17 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased] - TBD
 ### Added
-- Added TSOIL1 field to ExtState
+- Added TSOIL1 field to `ExtState`
+- Added `download_data.py` and `download_data.yml` to the `run` folder.  These will be copied into HEMCO standalone rundirs
+- Added `run/cleanRunDir.sh` script to remove old output files & log files
 
 ### Fixed
 - Fixed formatting error in `.github/workflows/stale.yml` that caused the Mark Stale Issues action not to run
 
 ### Changed
 - Added emission factors for ALK6, C4H6, EBZ, STYR, TMB for GFED and FINN biomass burning extensions
 - Updated soil NOx extention to include the option to use soil temperature and parameterization based on Yi Wang et al. (ERL, 2021) instead of the temperature at 2 meters.
+- Updated HEMCO standalone to print the dry-run header to the HEMCO log file unit `HcoState%Config%Err%Lun` only if the file is opened
 
 ## [3.9.3] - 2024-08-13
 ### Fixed

run/cleanRunDir.sh

@@ -0,0 +1,40 @@
+#!/bin/bash
+
+#============================================================================
+# cleanRunDir.sh: Removes files created by GEOS-Chem from a run directory
+#
+# Usage:
+# ------
+# $ ./cleanRunDir.sh     # Removes model output files in the run directory.
+#                        # Also prompts the user before removing diagnostic
+#                        # output files in OutputDir/.
+#
+# $ ./cleanRunDir.sh 1   # Removes model ouptut files in the run directory,
+#                        # but will remove diagnostic output files without
+#                        # prompting first.  USE WITH CAUTION!
+#============================================================================
+
+# Clean model output files in the run directory
+rm -fv *~
+rm -fv HEMCO.log
+rm -fv log*
+rm -fv slurm-*
+rm -fv core.*
+rm -fv fort.*
+
+#----------------------------------------------------------------------------
+# Clean data files in OutputDir.
+# These are netCDF files (*.nc) and KPP standalone interface files (*.txt).
+#----------------------------------------------------------------------------
+if [[ "x${1}" == "x" ]]; then      # User confirmation required
+    rm -Iv ./OutputDir/*.nc*
+    rm -Iv ./OutputDir/*.txt
+else                               # User Confirmation not required
+    rm -fv ./OutputDir/*.nc*
+    rm -fv ./OutputDir/*.txt*
+fi
+
+#---------------------------------------------------------------------------
+# Give instruction to reset start date if using GCHP
+#---------------------------------------------------------------------------
+echo "Reset simulation start date in cap_restart if using GCHP"

run/createRunDir.sh

@@ -306,6 +306,7 @@ cp ./HEMCO_sa_Spec.rc               ${rundir}
 cp ./${grid_file}                   ${rundir}
 cp ./runHEMCO.sh                    ${rundir}
 cp ./README                         ${rundir}
+cp ./download_data*                 ${rundir}
 cp ${hco_config_dir}/HEMCO_Config.* ${rundir}
 if  [[ -f ${hco_config_dir}/HEMCO_Diagn.rc ]]; then
     cp ${hco_config_dir}/HEMCO_Diagn.rc ${rundir}