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gianlucarloni/README.md

πŸš€ About Me

Hi there! I'm Gianluca, a passionate Research Scientist involved in conquering cancer through AI


πŸ’Ό Career Highlights

Applied Research Scientist at Lunit Inc. πŸ”΅ πŸ”΅

Nov 2024 - Present
Berlin, Germany

In the Model-Centric AI research team of the Oncology group, I have been:

  • 🩻 Developing AI models to advance the suit of LunitΒ΄s products and the SOTA in medical image analysis.
  • πŸ’» Contributing to the internal research codebases with high-quality code and development standards.
  • 🀝 Collaborating with research engineers and medical doctors for practical medical applications.
  • πŸ“° Pushing Lunit's technological advancement and publishing in top-tier journals and conferences

Research Fellow and PhD Student at National Research Council of Italy

Sep 2021 - Oct 2024
Pisa, Italy

In the Signals and Images Laboratory, I have:

  • ⏫ Proposed bias-mitigation frameworks for robust DL image classification in out-of-distribution settings under domain shift. Based on causal inference, feature disentanglement, contrastive learning, and injection of prior knowledge. Applied to large RWD CXR datasets.
  • πŸ” Investigated techniques to discover causal disposition signals in images via Attention-inspired CNNs for cancer prediction from medical imaging (prostate MRI and HE digital pathology).
  • 🧠 Proposed biologically inspired context-aware image classifiers akin to human vision.
  • πŸ€– Experienced with DDPMs (generative AI) to synthesize MRI images of prostate cancer.
  • πŸ“š Led a systematic literature review to study the intersection of causality and Explainable AI.
  • 🀱 Explored the applicability of prototypical part learning in medical imaging by experimenting with ProtoPNet on a breast mass classification from mammogram images.

Visiting researcher at The University of Edinburgh

Apr - Jun 2023
Edinburgh, UK

At the VIOS Collaboratory led by Prof. Tsaftaris, I have:

  • πŸ”­ Experimented with representation learning, causal reasoning in neural networks, and diffusion models.
  • ↔️ Collaborated in international research groups
  • πŸ–₯️ Group-coded with four other PhD students for a MICCAI 2023 challenge.

πŸ‘¨β€πŸŽ“ Education

PhD in Information Engineering

Pisa, Italy (Nov 2021 - Nov 2024)
Thesis: β€œHuman-aligned Deep Learning: Explainability, Causality, and Biological Inspiration.”

MSc in Biomedical Engineering

Pisa, Italy (Oct 2018 - Jul 2021)
Thesis: β€œStudy and development of advanced models integrating radiomic features and clinical data for outcome prediction in non-small cell lung cancer patients treated for brain metastases with stereotactic radiotherapy.”

BSc in Biomedical Engineering

Bologna, Italy (Sep 2015 - Oct 2018)
Thesis: β€œDevelopment of a Graphical User Interface in MATLAB for the visualization and spectral analysis of EEG and ECG signals.”


πŸ› οΈ Technologies & Tools

Programming Languages:

Python Libraries:

Tools & Technologies:


🌟 Notable Projects during my PhD on AI for Medical Imaging

to do

  1. [Project Name 1](Link to GitHub Repo)
    Short description of the project and technologies used.
    πŸš€ Features: [Key Features]
    πŸ’» Built with: [Tech Stack]

  2. [Project Name 2](Link to GitHub Repo)
    Short description of the project and technologies used.
    πŸš€ Features: [Key Features]
    πŸ’» Built with: [Tech Stack]


πŸ“ˆ GitHub Stats

My GitHub stats


πŸ“ž Connect With Me

LinkedIn


🎨 Fun Fact

When I’m not coding, I’m into photography, cooking, rock music, and exploring the outdoors. Here’s a peek at my stuff:

Pinned Loading

  1. crocodile crocodile Public

    Carloni, G., Tsaftaris, S. A., & Colantonio, S. (2024). CROCODILE: Causality aids RObustness via COntrastive DIsentangled LEarning @ MICCAI 2024 UNSURE Workshop

    Python 7 1

  2. causality_conv_nets causality_conv_nets Public

    Experiment with our attention-inspired framework for causality-driven CNNs: learn how to model causal dispositions within image datasets and enhance your image classifier's performance and XAI robu…

    Python 4 1

  3. CoCoReco CoCoReco Public

    Code base for our paper "Connectivity-Inspired Network for Context-Aware Recognition" (ECCV 2024, Human-inspired Computer Vision workshop)

    Python 3