Prerequisites: tools and packages

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Sasha edited this page Feb 3, 2020 · 2 revisions

These are the versions of tools we used.

bash (v4.2.46)
bcftools (v1.3.1)
bedtools (v2.27.1)
cufflinks (v2.2.1)
gatk (v4.0.0.0) on java (v1.8.0_112)
gcc (v6.2.0)
htslib (v1.3.2)
python3 (v3.6.0)
python2 (v2.7.12)
R (v3.5.1)
samtools (v1.3.1)
STAR (v2.5.4a)
vcftools (v0.1.17)