Use fixed clang format

.clang-format

@@ -3,26 +3,26 @@ Language:        Cpp
 # BasedOnStyle:  Google
 AccessModifierOffset: -4
 AlignAfterOpenBracket: Align
-AlignConsecutiveAssignments: false
-AlignConsecutiveDeclarations: false
+AlignConsecutiveAssignments: None
+AlignConsecutiveDeclarations: None
 AlignEscapedNewlines: Left
 AlignOperands:   true
 AlignTrailingComments: true
 AllowAllParametersOfDeclarationOnNextLine: true
-AllowShortBlocksOnASingleLine: false
+AllowShortBlocksOnASingleLine: Never
 AllowShortCaseLabelsOnASingleLine: false
 AllowShortFunctionsOnASingleLine: All
 AllowShortIfStatementsOnASingleLine: true
 AllowShortLoopsOnASingleLine: true
 AlwaysBreakAfterDefinitionReturnType: None
 AlwaysBreakAfterReturnType: None
 AlwaysBreakBeforeMultilineStrings: true
-AlwaysBreakTemplateDeclarations: true
+AlwaysBreakTemplateDeclarations: Yes
 BinPackArguments: true
 BinPackParameters: true
 BraceWrapping:
   AfterClass:      false
-  AfterControlStatement: false
+  AfterControlStatement: Never
   AfterEnum:       false
   AfterFunction:   true
   AfterNamespace:  false
@@ -88,7 +88,7 @@ PenaltyExcessCharacter: 1000000
 PenaltyReturnTypeOnItsOwnLine: 200
 PointerAlignment: Left
 ReflowComments:  true
-SortIncludes:    true
+SortIncludes:    CaseInsensitive
 SortUsingDeclarations: true
 SpaceAfterCStyleCast: false
 SpaceAfterTemplateKeyword: true
@@ -101,7 +101,7 @@ SpacesInContainerLiterals: true
 SpacesInCStyleCastParentheses: false
 SpacesInParentheses: false
 SpacesInSquareBrackets: false
-Standard:        Cpp11
+Standard:        c++14
 TabWidth:        8
 UseTab:          Never
 ...

.github/bot-pr-format-base.sh

@@ -1,24 +1,25 @@
 #!/usr/bin/env bash
 
-source .github/bot-pr-base.sh
+cp .github/bot-pr-base.sh /tmp
+source /tmp/bot-pr-base.sh
 
-echo "Retrieving PR file list"
-PR_FILES=$(bot_get_all_changed_files ${PR_URL})
-NUM=$(echo "${PR_FILES}" | wc -l)
-echo "PR has ${NUM} changed files"
-
-TO_FORMAT="$(echo "$PR_FILES" | grep -E $EXTENSION_REGEX || true)"
+echo "Set-up working tree"
 
 git remote add fork "$HEAD_URL"
 git fetch fork "$HEAD_BRANCH"
+git fetch origin "$BASE_BRANCH"
+
+# checkout current PR head
+LOCAL_BRANCH=format-tmp-$HEAD_BRANCH
+git checkout -b $LOCAL_BRANCH fork/$HEAD_BRANCH
 
 git config user.email "ginkgo.library@gmail.com"
 git config user.name "ginkgo-bot"
 
 # save scripts from develop
-pushd dev_tools/scripts
+pushd dev_tools/scripts || exit 1
 cp add_license.sh format_header.sh update_ginkgo_header.sh /tmp
-popd
+popd || exit 1
 
 # checkout current PR head
 LOCAL_BRANCH=format-tmp-$HEAD_BRANCH
@@ -28,12 +29,3 @@ git checkout -b $LOCAL_BRANCH fork/$HEAD_BRANCH
 cp /tmp/add_license.sh dev_tools/scripts/
 cp /tmp/format_header.sh dev_tools/scripts/
 cp /tmp/update_ginkgo_header.sh dev_tools/scripts/
-
-# format files
-dev_tools/scripts/add_license.sh
-dev_tools/scripts/update_ginkgo_header.sh
-for f in $(echo "$TO_FORMAT" | grep -E $FORMAT_HEADER_REGEX); do dev_tools/scripts/format_header.sh "$f"; done
-for f in $(echo "$TO_FORMAT" | grep -E $FORMAT_REGEX); do "$CLANG_FORMAT" -i -style=file "$f"; done
-
-# restore formatting scripts so they don't appear in the diff
-git checkout -- dev_tools/scripts/*.sh

.github/check-format.sh

@@ -3,17 +3,27 @@
 cp .github/bot-pr-format-base.sh /tmp
 source /tmp/bot-pr-format-base.sh
 
+echo -n "Run Pre-Commit checks"
+
+pipx run pre-commit run --show-diff-on-failure --color=always --from-ref "origin/$BASE_BRANCH" --to-ref HEAD || true
+
+echo -n "Collecting information on changed files"
+
 # check for changed files, replace newlines by \n
 LIST_FILES=$(git diff --name-only | sed '$!s/$/\\n/' | tr -d '\n')
+echo -n .
 
 git diff > /tmp/format.patch
 mv /tmp/format.patch .
+echo -n .
 
 bot_delete_comments_matching "Error: The following files need to be formatted"
+echo -n .
 
 if [[ "$LIST_FILES" != "" ]]; then
   MESSAGE="The following files need to be formatted:\n"'```'"\n$LIST_FILES\n"'```'
   MESSAGE="$MESSAGE\nYou can find a formatting patch under **Artifacts** [here]"
   MESSAGE="$MESSAGE($JOB_URL) or run "'`format!` if you have write access to Ginkgo'
   bot_error "$MESSAGE"
 fi
+echo .

.github/format-rebase.sh

@@ -1,25 +1,7 @@
 #!/usr/bin/env bash
 
-source .github/bot-pr-base.sh
-
-git remote add base "$BASE_URL"
-git remote add fork "$HEAD_URL"
-
-git remote -v
-
-git fetch base $BASE_BRANCH
-git fetch fork $HEAD_BRANCH
-
-git config user.email "$USER_EMAIL"
-git config user.name "$USER_NAME"
-
-LOCAL_BRANCH=rebase-tmp-$HEAD_BRANCH
-git checkout -b $LOCAL_BRANCH fork/$HEAD_BRANCH
-
-# save scripts from develop
-pushd dev_tools/scripts
-cp add_license.sh format_header.sh update_ginkgo_header.sh /tmp
-popd
+cp .github/bot-pr-format-base.sh /tmp
+source /tmp/bot-pr-format-base.sh
 
 bot_delete_comments_matching "Error: Rebase failed"
 
@@ -30,7 +12,7 @@ git rebase --rebase-merges --empty=drop --no-keep-empty \
     --exec "cp /tmp/add_license.sh /tmp/format_header.sh /tmp/update_ginkgo_header.sh dev_tools/scripts/ && \
             dev_tools/scripts/add_license.sh && dev_tools/scripts/update_ginkgo_header.sh && \
             for f in \$($DIFF_COMMAND | grep -E '$FORMAT_HEADER_REGEX'); do dev_tools/scripts/format_header.sh \$f; done && \
-            for f in \$($DIFF_COMMAND | grep -E '$FORMAT_REGEX'); do $CLANG_FORMAT -i \$f; done && \
+            pipx run pre-commit run && \
             git checkout dev_tools/scripts && (git diff >> /tmp/difflog; true) && (git diff --quiet || git commit -a --amend --no-edit --allow-empty)" \
     base/$BASE_BRANCH 2>&1 || bot_error "Rebase failed, see the related [Action]($JOB_URL) for details"
 

.github/format.sh

@@ -3,11 +3,29 @@
 cp .github/bot-pr-format-base.sh /tmp
 source /tmp/bot-pr-format-base.sh
 
+echo "Retrieving PR file list"
+PR_FILES=$(bot_get_all_changed_files ${PR_URL})
+NUM=$(echo "${PR_FILES}" | wc -l)
+echo "PR has ${NUM} changed files"
+
+TO_FORMAT="$(echo "$PR_FILES" | grep -E $EXTENSION_REGEX || true)"
+
+# format files
+dev_tools/scripts/add_license.sh
+dev_tools/scripts/update_ginkgo_header.sh
+for f in $(echo "$TO_FORMAT" | grep -E $FORMAT_HEADER_REGEX); do dev_tools/scripts/format_header.sh "$f"; done
+pipx run pre-commit run --files $TO_FORMAT || true
+
+# restore formatting scripts so they don't appear in the diff
+git checkout -- dev_tools/scripts/*.sh
+
 # check for changed files, replace newlines by \n
-LIST_FILES=$(git diff --name-only | sed '$!s/$/\\n/' | tr -d '\n')
+CHANGES=$(git diff --name-only | sed '$!s/$/\\n/' | tr -d '\n')
+
+echo "$CHANGES"
 
 # commit changes if necessary
-if [[ "$LIST_FILES" != "" ]]; then
+if [[ "$CHANGES" != "" ]]; then
   git commit -a -m "Format files
 
 Co-authored-by: $USER_COMBINED"

.github/workflows/bot-pr-comment.yml

@@ -1,60 +1,50 @@
+name: OnCommentPR
+
 on:
   issue_comment:
     types: [created]
-name: OnCommentPR
+
 jobs:
   label:
     runs-on: ubuntu-latest
     if: github.event.issue.pull_request != '' && github.event.comment.body == 'label!' && (github.event.comment.author_association == 'COLLABORATOR' || github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER')
     steps:
     - name: Checkout the latest code (shallow clone)
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
       with:
         ref: develop
     - name: Add appropriate labels
       env:
         GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }}
       run: cp --preserve .github/label.sh /tmp && /tmp/label.sh
+
   check_format:
     name: check-format
-    runs-on: ubuntu-22.04
     if: github.event.issue.pull_request != '' && github.event.comment.body == 'check-format!' && (github.event.comment.author_association == 'COLLABORATOR' || github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER')
-    steps:
-    - name: Checkout the latest code (shallow clone)
-      uses: actions/checkout@v3
-      with:
-        ref: develop
-    - name: Check for formatting changes
-      env:
-        GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }}
-      run: cp --preserve .github/check-format.sh /tmp && /tmp/check-format.sh
-    - name: Upload code formatting patch
-      if: failure()
-      uses: actions/upload-artifact@v3
-      with:
-          name: patch
-          path: format.patch
+    uses: ./.github/workflows/check-formatting.yml
+
   format:
     name: format
     runs-on: ubuntu-22.04
     if: github.event.issue.pull_request != '' && github.event.comment.body == 'format!' && (github.event.comment.author_association == 'COLLABORATOR' || github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER')
     steps:
     - name: Checkout the latest code (shallow clone)
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
       with:
         ref: develop
         persist-credentials: false
     - name: Commit formatting changes
       env:
         GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }}
       run: cp --preserve .github/format.sh /tmp && /tmp/format.sh
+
   rebase:
     name: rebase
     if: github.event.issue.pull_request != '' && github.event.comment.body == 'rebase!' && (github.event.comment.author_association == 'COLLABORATOR' || github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER')
     runs-on: ubuntu-latest
     steps:
     - name: Checkout the latest code
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
       with:
         ref: develop
         fetch-depth: 0
@@ -63,13 +53,14 @@ jobs:
       env:
         GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }}
       run: cp --preserve .github/rebase.sh /tmp && /tmp/rebase.sh
+
   format-rebase:
     name: format-rebase
     if: github.event.issue.pull_request != '' && github.event.comment.body == 'format-rebase!' && (github.event.comment.author_association == 'COLLABORATOR' || github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER')
     runs-on: ubuntu-22.04
     steps:
     - name: Checkout the latest code
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
       with:
         ref: develop
         fetch-depth: 0

.github/workflows/bot-pr-created.yml

@@ -8,7 +8,7 @@ jobs:
     if: github.event.pull_request.author_association == 'COLLABORATOR' || github.event.pull_request.author_association == 'MEMBER' || github.event.pull_request.author_association == 'OWNER'
     steps:
       - name: Checkout the latest code (shallow clone)
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           ref: develop
       - name: Add appropriate labels

.github/workflows/bot-pr-updated.yml

@@ -1,42 +1,31 @@
+name: OnSyncPR
+
 on:
   pull_request_target:
     types: [opened,synchronize]
-name: OnSyncPR
+
 concurrency:
   group: ${{ github.workflow }}-${{ github.event.pull_request.number }}
   cancel-in-progress: true
+
 jobs:
   check-format:
-    runs-on: ubuntu-22.04
     if: github.event.pull_request.author_association == 'COLLABORATOR' || github.event.pull_request.author_association == 'MEMBER' || github.event.pull_request.author_association == 'OWNER'
-    steps:
-      - name: Checkout the latest code (shallow clone)
-        uses: actions/checkout@v3
-        with:
-          ref: develop
-      - name: Check for formatting changes
-        env:
-          GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }}
-        run: cp .github/check-format.sh /tmp && /tmp/check-format.sh
-      - name: Upload code formatting patch
-        if: failure()
-        uses: actions/upload-artifact@v3
-        with:
-          name: patch
-          path: format.patch
+    uses: ./.github/workflows/check-formatting.yml
+
   abidiff:
     runs-on: ubuntu-latest
     if: github.event.pull_request.author_association == 'COLLABORATOR' || github.event.pull_request.author_association == 'MEMBER' || github.event.pull_request.author_association == 'OWNER'
     env:
       CMAKE_FLAGS: -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=DEBUG -DGINKGO_BUILD_TESTS=OFF -DGINKGO_BUILD_EXAMPLES=OFF -DGINKGO_BUILD_BENCHMARKS=OFF -DGINKGO_BUILD_HWLOC=OFF -DGINKGO_BUILD_REFERENCE=OFF -DGINKGO_BUILD_OMP=OFF -DGINKGO_BUILD_CUDA=OFF -DGINKGO_BUILD_HIP=OFF -DGINKGO_BUILD_SYCL=OFF
     steps:
       - name: Checkout the new code (shallow clone)
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           path: new
           ref: ${{ github.event.pull_request.head.ref }}
       - name: Checkout the old code (shallow clone)
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           path: old
           ref: ${{ github.event.pull_request.base.ref }}
@@ -58,14 +47,15 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@v3
         with:
-            name: abi
-            path: abi.diff
+          name: abi
+          path: abi.diff
+
   check-wiki-changelog:
     runs-on: ubuntu-latest
     if: github.event.pull_request.author_association == 'COLLABORATOR' || github.event.pull_request.author_association == 'MEMBER' || github.event.pull_request.author_association == 'OWNER'
     steps:
     - name: Checkout the latest code (shallow clone)
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
       with:
         ref: develop
     - name: Check if PR number exists in wiki/Changelog

.github/workflows/check-formatting.yml

@@ -0,0 +1,21 @@
+name: Check formatting
+on: workflow_call
+
+jobs:
+  pre-commit:
+    name: Run pre-commit hooks
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Checkout the latest code (shallow clone)
+        uses: actions/checkout@v4
+      - name: Run Pre-Commit checks
+        run: cp .github/check-format.sh /tmp && /tmp/check-format.sh
+        id: pre-commit
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - name: Upload code formatting patch
+        if: ${{ failure() }}
+        uses: actions/upload-artifact@v3
+        with:
+          name: patch
+          path: format.patch

.github/workflows/intel.yml

@@ -28,7 +28,7 @@ jobs:
 
     steps:
     - name: Checkout the latest code (shallow clone)
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
 
     - name: configure
       run: |