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Running Modeller for Protein Modelling using Python and Jupyter Notebooks

GPL-3.0 license

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README.md		README.md
advModel.ipynb		advModel.ipynb
model_basic1.ipynb		model_basic1.ipynb

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ModellerNotebooks

Run Modeller for Protein Modelling using Python and Jupyter Notebooks.

Run Modeller, Generate plots, Visualize 3D models of proteins within Jupyter Notebook

The Notebook includes both scripts as well as sample output, so kindly download and load to Jupyter Notebook.

Packages required

modeller numpy matplotlib pylab nglview RamchandranDraw

Notebooks

Basic Protein Modelling with single template - model_basic1.ipynb
Advanced Protein Modelling with multiple templates - advModel.ipynb
Loop refinement for the models generated -

Whoever finds, command-line is difficult to start, make use of these notebooks to start exploring protein modelling.

Personal webpage : https://bit.ly/giribio20

Kindly cite this notebook in your publications if you use it for calculations.

Cite as : Girinath G. Pillai, NyroModelleNotebook v1., 2020. https://doi.org/10.5281/zenodo.4294751

Github: https://github.com/giribio/ModellerNotebooks