Rust, ruby: Update cargo dependencies

[paldepind]

Updates cargo dependencies for Rust and Ruby.

• Ruby DCA report
• Rust DCA report

I think I've generated the reports with the correct flags. The Ruby report complains about stage timings, with I can't really judge.

[Copilot]

Pull Request Overview

This PR updates Cargo dependencies for Rust and Ruby extractors to their latest compatible versions. The update includes minor version bumps for various serialization, regular expression, and CLI-related crates.

Key Changes

• Updated core dependencies like serde from 1.0.219 to 1.0.228, regex from 1.11.2 to 1.11.3, and clap from 4.5.47 to 4.5.48
• Updated tree-sitter-embedded-template from 0.23.2 to 0.25.0 for Ruby extractor
• Updated build system and Bazel configuration files to reflect the new dependency versions

Reviewed Changes

Copilot reviewed 89 out of 90 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
shared/tree-sitter-extractor/Cargo.toml	Updated regex dependency to 1.11.3
rust/extractor/macros/Cargo.toml	Updated quote dependency to 1.0.41
rust/extractor/Cargo.toml	Updated multiple dependencies including anyhow, clap, serde, serde_json, and toml
rust/ast-generator/Cargo.toml	Updated quote, serde, and anyhow dependencies
ruby/extractor/Cargo.toml	Updated tree-sitter-embedded-template, regex, and serde_json dependencies
misc/bazel/3rdparty/tree_sitter_extractors_deps/defs.bzl	Updated Bazel dependency mappings to match new versions
misc/bazel/3rdparty/tree_sitter_extractors_deps/BUILD.*.bazel	Updated numerous Bazel build files with new dependency versions and configurations
MODULE.bazel	Updated Bazel module references to new dependency versions

[geoffw0]

I'm still waiting for a fully working Rust DCA run on this PR. Otherwise happy with it.

[paldepind]

Thanks for the ping @geoffw0. I had missed your other comment. I ran the retry command, and as far as I can tell the DCA report now looks fine.